Dmen047870.1
Basic Information
- Insect
- Diarsia mendica
- Gene Symbol
- -
- Assembly
- GCA_949316265.1
- Location
- OX438914.1:7025528-7028974[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 4.4e-05 0.0062 18.5 0.9 1 23 9 32 9 32 0.96 2 24 0.14 20 7.5 0.3 2 23 35 57 34 57 0.95 3 24 0.063 8.8 8.6 1.8 2 20 63 81 62 86 0.91 4 24 0.0065 0.91 11.7 2.5 2 23 131 153 130 153 0.93 5 24 7.6 1.1e+03 2.1 0.4 2 23 182 204 181 204 0.93 6 24 0.01 1.4 11.1 0.0 1 23 226 249 226 249 0.91 7 24 3e-05 0.0042 19.1 0.9 1 23 254 277 254 277 0.95 8 24 1.4e-05 0.002 20.1 0.3 1 23 283 306 283 306 0.96 9 24 0.00016 0.022 16.8 1.1 2 23 312 334 311 334 0.97 10 24 0.0041 0.57 12.3 2.4 1 23 371 393 371 393 0.96 11 24 0.074 10 8.4 0.1 3 23 422 443 422 443 0.96 12 24 0.0082 1.1 11.4 1.9 1 23 463 486 463 486 0.96 13 24 3.5e-05 0.0048 18.9 0.5 1 23 491 514 491 514 0.96 14 24 0.0013 0.18 13.9 0.8 1 23 519 542 519 542 0.96 15 24 0.00098 0.14 14.3 0.9 3 23 546 567 545 567 0.95 16 24 0.01 1.5 11.1 1.3 2 21 575 594 574 595 0.94 17 24 0.0035 0.49 12.5 1.7 1 23 649 672 649 672 0.94 18 24 0.8 1.1e+02 5.1 0.0 2 23 745 768 744 768 0.94 19 24 1.6e-05 0.0023 19.9 0.1 3 23 775 796 774 796 0.94 20 24 0.0029 0.41 12.8 2.8 2 23 801 823 800 823 0.94 21 24 0.0092 1.3 11.2 5.1 1 23 828 851 828 851 0.96 22 24 2e-05 0.0028 19.6 5.0 1 23 855 878 855 878 0.97 23 24 0.00023 0.033 16.3 0.3 2 23 885 906 884 906 0.96 24 24 8.3e-06 0.0012 20.8 0.6 1 23 912 934 912 934 0.98
Sequence Information
- Coding Sequence
- ATGAGATTCCATCATAAGACATGCCATTCTTGTACCAAATGCGATGAGAAGTTTCCTACCAACGCAGAGTTACAGGTTCATAGGTCTACCGCTCATTCTTCGACCTGCAACATCTGTTTTCAAGTCTTTGCAAATGATGGTAAGAGGCTAGCTCATCTAAAATCAGACCATGCCAGTGATCAAAACCAATGCGGTTTCTGCAATAAAACTCTAACAACCAAACAAGCGTTTATAAGACATGCCGCAAATTGCGAACACAAACCTACCGAAGAATCCATTATAATCGATGAAGAAGACAAAAAGATTTCTGTCAAAGAAATAAGAAAAGGCTTAGCAGCCATCTTTAATATGACTACCGCACTTCCTTTTAAATTCTTCATGAACAGGCTCCGATGTTTCTACTGTACGAAAGACTTTAACTCTTGCGAGGACCTAAAGGAGCATACGTTGAATGCACATCCTCATTGCGATATATCTTTCAAGTCCATGAGATTGAGGAACAGATATGACGGTGTTCAAATCAAAGTTGATATTTCAGCCTTGTCTTGTAGACTGTGCCATATCTCCTTGCAAGATTTATACGATGTGGTAGACCATTTGAGCAAAGAGCATAAAGTCAAATGCACCTTTTCTGTCGAAAGTAACCTACAGCCTTACAAACTGATAAAAGACAACTATCCTTGCCCTATTTGTGGTGAGATTTATAGATACTTTGGAGTCCTACTAAAGCATGTTAGCGCCTCTCACAGTGGTAACAAACATATTTGCATGTACTGCGGAAAAGCGTTCAGAACGGACCCGAATTTAAGAGCTCATATATCCAGACGACATAAAGTCACTGATAATCACAAGTGCAGTGATTGCGATCTTGTTTTTGCGACTAACGGTGCGCTTAGGAATCATCAAGGGACGGTTCACGGTACTAAATTAGTTCAGTGCTTCGAATGTACTGAAAAATTCACTTCACAGTATTCCATGCAAAGACATTTGATCACGTCTCACGATGGTCTACCAGGGCCGTACGAAGGCTGTACCTCTGAAAGGCGACGGAAAAACTTGAAACTACTGTTCAACCACACAACCATCATGCCATTTAAATGGCGAGGCAAATATCTTTGCTTCTACTGCGGAAAAAACTATACAGAATACATAGAATTCAGAAAGCATACGAAATCTCACGGATTATGTACCACTAAAGATTACTCCCTCAAATTGATCAAAGGCAACAATGTCGAAATTAAAATCGATGTCTCAGAAATTGGTTGCGACATCTGCAATGAACCCTTCAACAGATTCGAAGAAATAATCGATCATTTGATCTCGAAACACaagttagaatataataaaaacatcgaAATACCCTTCCAAGAATATCGACTCGTTGACTTTCGATGTTTACACTGCGAAGAGCAGTTTTCGTACTTCGGTTATTTGGTTAAACATGTCAATAATGTACACCCGCAGAATTGTTTCATATGCGATGATTGTGGAGTTACTTTCAACAAGAAAAGAGATTTGTCTATACACTTACGGAATTATCACAGACAAGGAGGTTATCCCTGCGATTTGTGCTTGAAAAACTTCGAAACTCGCCTCATGTTGCGTAGACATCAAAATAATATGCATTTTAGACACTGCAAGAGTTGTGGTTTGCGATTCGCGTCCCTATCTCTCTTACAAAAACATGTATTAGTCGATCATCCACAAAATGAAAGTAATATGAAGTGCAGTTACTGCTCCAAAGAGTTCCACACTTCTTTAGGCTTACGGCAGCATATAAGCAAATGTAAAGTAAAGATTATATCTCAGGTCGAACCACAAACTTCGTTCTTAAACGATAGTAACATAGAACCGAAGAAAAAACAGAATATATTACAAATAAGACAGAACATACAGTGTGTACTTAATATGTCGACTGCTGTGCCTTTCAAATTCTTCTCCAAATACTCTTGTTTTTATTGCTCAAAGAAATTCGTAGAATTTGACGAATTACGCCAGCATACTAGTCTTGAACATCCTGTTTGTGATTTGAAATCCAAATGCATGAAAAAATGTAAAGGAGAAAGGATAGCTGTGAAAATCGATATATCTACGTTAGCTTGTAAATTATGTTGCCTTCCTATGCCTACCTTAGAAGATTTGATCACTCATTTAATAGCTGAACATAAGGCGAATTACGATACGTCAATTTCTGGATGTTTAGAACCTTTTCGCGTTATAAAGGACAACATGCCATGTCCTATATGCCCCGATACTGTATTCAGATACTTCGGCATTCTGCTTCGCCATATGAACTCCGAACACAGCAACAATAATCGGATATGCGATTTCTGCGGTCGTAGTTTCAGAAACGCAGCAAATCTAAACGTGCATATAACTTACGCGCATACCGGTTCATGCGAATGTGACATCTGTGGTGTTAAGTATAAGAACCAATGGTGTTTAGCACGGCATAGAGCGAGGACCCACGATGTGAAAGACCACAAATGTCCAAAATGCCCCGAGCAATTCCAGTCGCAGTATCATAAGCAGAAACATCTGATTAAAATGCACAATGTTGGACATAAATGTAGTTATTGCGGTAAAATGTTTACGAGAAACTCCTTCATGAAAGACCATGTTAGGAGGACACATTTGAAAGAAAAGAACATTCCGTGCTCAATATGCAATGAGAAATTTTTCGATAATTATCTTCTTAGGATGCATATGGTAAAGCATGAGGGGGATCGGAAATTCAGTTGTACTGTTTGTGGAAAAGCCTTTTTGAGGCGAAGTAATTTGAGCTCGCATATGGAGATGCATAAGAAATATGGGCATGTGCAGTTGTAG
- Protein Sequence
- MRFHHKTCHSCTKCDEKFPTNAELQVHRSTAHSSTCNICFQVFANDGKRLAHLKSDHASDQNQCGFCNKTLTTKQAFIRHAANCEHKPTEESIIIDEEDKKISVKEIRKGLAAIFNMTTALPFKFFMNRLRCFYCTKDFNSCEDLKEHTLNAHPHCDISFKSMRLRNRYDGVQIKVDISALSCRLCHISLQDLYDVVDHLSKEHKVKCTFSVESNLQPYKLIKDNYPCPICGEIYRYFGVLLKHVSASHSGNKHICMYCGKAFRTDPNLRAHISRRHKVTDNHKCSDCDLVFATNGALRNHQGTVHGTKLVQCFECTEKFTSQYSMQRHLITSHDGLPGPYEGCTSERRRKNLKLLFNHTTIMPFKWRGKYLCFYCGKNYTEYIEFRKHTKSHGLCTTKDYSLKLIKGNNVEIKIDVSEIGCDICNEPFNRFEEIIDHLISKHKLEYNKNIEIPFQEYRLVDFRCLHCEEQFSYFGYLVKHVNNVHPQNCFICDDCGVTFNKKRDLSIHLRNYHRQGGYPCDLCLKNFETRLMLRRHQNNMHFRHCKSCGLRFASLSLLQKHVLVDHPQNESNMKCSYCSKEFHTSLGLRQHISKCKVKIISQVEPQTSFLNDSNIEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRQHTSLEHPVCDLKSKCMKKCKGERIAVKIDISTLACKLCCLPMPTLEDLITHLIAEHKANYDTSISGCLEPFRVIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRARTHDVKDHKCPKCPEQFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCTVCGKAFLRRSNLSSHMEMHKKYGHVQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00446419; iTF_00173442; iTF_00375556; iTF_00238007; iTF_00374455; iTF_00172046; iTF_01064881;
- 90% Identity
- iTF_00173442;
- 80% Identity
- -