Npro025304.1
Basic Information
- Insect
- Noctua pronuba
- Gene Symbol
- -
- Assembly
- GCA_905220335.1
- Location
- LR999922.1:4971069-4975057[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.11 10 7.5 0.8 1 23 67 89 67 89 0.95 2 26 0.15 14 7.1 0.0 2 23 117 139 116 139 0.92 3 26 0.0001 0.0095 17.0 0.4 2 23 160 182 159 182 0.96 4 26 0.032 2.9 9.2 3.6 1 23 187 209 187 210 0.96 5 26 7.1e-05 0.0066 17.5 1.3 1 23 214 237 214 237 0.96 6 26 0.072 6.6 8.1 0.4 2 23 240 262 239 262 0.95 7 26 0.16 15 7.0 1.3 2 20 267 285 266 290 0.91 8 26 0.0077 0.71 11.1 2.9 2 23 335 357 334 357 0.93 9 26 0.00045 0.042 15.0 0.0 1 23 430 453 430 453 0.92 10 26 8.8e-05 0.0082 17.3 0.9 1 23 458 481 458 481 0.94 11 26 0.11 10 7.5 0.1 1 16 487 502 487 502 0.91 12 26 0.0038 0.36 12.1 2.4 1 23 536 558 536 558 0.96 13 26 0.069 6.4 8.1 0.1 3 23 587 608 587 608 0.96 14 26 0.0041 0.38 12.0 0.8 1 23 628 651 628 651 0.96 15 26 3.2e-05 0.003 18.6 0.5 1 23 656 679 656 679 0.96 16 26 0.0012 0.11 13.7 0.8 1 23 684 707 684 707 0.96 17 26 0.00091 0.085 14.1 0.9 3 23 711 732 710 732 0.95 18 26 0.0098 0.9 10.8 1.3 2 21 740 759 739 760 0.94 19 26 0.01 0.96 10.7 2.6 1 22 814 835 814 837 0.90 20 26 0.75 69 4.9 0.0 2 23 910 933 909 933 0.94 21 26 1.5e-05 0.0014 19.6 0.1 3 23 940 961 939 961 0.94 22 26 0.0027 0.25 12.6 2.8 2 23 966 988 965 988 0.94 23 26 0.0086 0.8 11.0 5.1 1 23 993 1016 993 1016 0.96 24 26 1.9e-05 0.0017 19.4 5.0 1 23 1020 1043 1020 1043 0.97 25 26 0.00022 0.02 16.0 0.3 2 23 1050 1071 1049 1071 0.96 26 26 7.8e-06 0.00072 20.6 0.6 1 23 1077 1099 1077 1099 0.98
Sequence Information
- Coding Sequence
- ATGGGCTTATACAGAACACATATGTACTTCGCCATCCCTCCATGCACTGCCTTTGCCAACTCAAAAGTACAAAACAATAATTTCTTTTCAGATTTGGAAACAGAGATGACAAAGCACAGTGCTAGTTATCTAAGGAGGCGAAATCTGCAAATATTACTCAACCACACAACGTTGATACCTTTTAAATGGCGCGGCAAATACCTCTGCTTTTATTGCGGAGATGATACGAAGACGCCCGATCGTCTCCGGAAACACACGAAAGCTCACGGACCTTGTACTGATAGGGACAGAGCTATAAGACTAGTTAAATCAGCTGATGTAGAAATTAAAATAGATGTTTCCGATGTTAGTTGCGAGATTTGTTCAGAATCTTTTCCGTTTTTAGACGAAATCATCGATCATTTGATTTTGAAACACCAATTGCCTTATGACAAAGATATAGACATATTCTTATCAGCCTACAGGTTATTAGATCTACAATGCCTCCTCTGCGATAAAAGCTTTAATTACTTACGTAAATTGATAAGCCATATGAATGTCGCCCATCCGAATAACAGCTATGAGTGCGCTAAATGTATTAAGAAGTTTAACAAAAAGAGGGATTTAGATTCGCATATAAGATTCCATCATAAGACAAGCCATTCTTGTACCAAATGCGATGAAAAGTTCCCTACCAACGCAACGTTACAAGTTCACAGGTCTACAGCTCATTCTTCGACCTGCAACATATGTTTTCAAGTCTTTTCTTCTGATGGAAAGAGGCTAGCTCATCTAAAATCGGATCATGTCTCTGAAAACCAATGCGGATTCTGCAATAAAATTCTAACAACTAAACAAGCTTTTATAAGACATGCTGCAAATTGCGAACATAAACCAAACGAAGAATCCATCATAATTGATGAAGAAGACAAAAAGATATCTGTTAAAGAAATAAGAAAAGGTCTAGCAGCCATCTTTAATATAACTACAGCACTTCCTTTTAAATTCTTCATGAACAGGCTGAGATGTTTCTACTGCACGAAAGACTTTAACTCTTGCGAGGATTTAAAGGAGCATACGTTGAACGAACATCCTCATTGCGATATATCTTTCAAATCTATGAGGTTAAGGAACAGATATGACGGTGTTCAAATCAAAGTTGATACTTCGGCTCTGTCTTGTAGACTGTGTCATATCTCCTTGCAGGATTTGAACGATGTGGTCGACCATTTGAGCAAAGAGCATAAGGTGAAATGCGACTTTTCTGTGGAGAGTAATCTACAGCCTTACAAACTGATTAAAGATAACTACCCTTGCCCTATTTGTGGTGAAGTTTACAGATACTTTGGGCTCCTACTTAAGCATGTTAGTGCGTCTCACAGTGGTAATAAACATATTTGTATGTACTGCGGAAAAGCGTTCAGAACGGACCCGAATTTAAGAGCTCATGTATCAAGGCGACACAAAATCACTGAAAATCACAAGTGCAGTAATTGCGATCTGGTTTTTGCGACTAATGATGGTCTACCAGGGCCGTACGAAGGCTGTACCTCTGAGAGACGCCGGAAAAACTTGAAAATACTGTTCAACCACACAACCATCATGCCTTTTAAATGGCGAGGCAAATATCTTTGTTTCTACTGCGGAAAAAACTATACAGAATACATAGAATTCAGAAAGCATACAAAATCTCACGGACTATGTACCACTAAAGATTACTCCCTTAAATTAATCAAAGGAAATAATGTCGAAATTAAAATCGATGTCTCGGAAATTGGTTGTGACATCTGCAATGAGCCCTTCAACAGATTCGAAGAAATAATCGATCATTTGATCTCTAAACACAATTTAGAATACAATAAAAACATCGATATACCCTTCCAGGAATATCGACTCGTCGACTTTCGATGTCTGTACTGCGAAGAACAGTTTTCGTACTTCGGCTATTTGGTTAAACATGTCAATAATGTGCACCCGCAGAACTGTTTCATATGCGACGATTGTGGAGTAACTTTCAACAAGAAAAGAGATTTGTCTATACACTTAAGGAATTATCATAGACAAGGAGGTTATCCCTGCGATTTATGCTTGAAAAACTTCGAAACACGTCTCATGTTGCGGAGGCATCAAAATAACATGCATTTTAGACACTGCAAGAGTTGCGGTTTGCGATTCGCGTCCCTTTCTCTCTTACAAAAACATGTTCTAGTCGATCATCCACAAAATGAGAGTAATATGAAGTGCAGTTACTGCTCCAAAGAGTTTCACACTTCTTTAGGCTTACGACAGCATATTAGCAAATGCAAAGTAAAAATTATTTCGCAGGTCGAACCTCAAACTTCATTTCTGAACGACAGTAACATAGAACCGAAGAAAAAGCAGAATATATTACAAATAAGGCAGAACATACAGTGTGTACTAAATATGTCGACTGCTGTGCCTTTCAAATTCTTCTCAAAATACTCCTGTTTTTATTGCTCAAAGAAATTCGTTGAATTCGACGAGTTACGCCACCATACCGGTCTTGAACATCCCGTTTGTGATTTGAAATCCAAATGCATGAAGAAATGTAAAGGAGAGAGGATAGCTGTCAAAATCGATATATCTACATTAGCTTGCAAAATATGTTGCCTTCCTATGCCTAACTTAGAAGATTTGATCAACCATTTAATTGCTGAACATAAAGCGAATTACGATACGTCAATTTCTGGATGTTTAGAACCTTTTCGCGTTATAAAAGACAACATGCCATGTCCGATATGCCCCGATACTGTTTTCAGATACTTCGGTATTTTGCTTCGTCATATGAACTCCGAACACAGCAACAATAATCGAATATGCGATTTCTGCGGTCGAAGTTTCAGAAACGCAGCAAATCTAAACGTGCATATAACCTACGCTCATACCGGTTCATGCGAATGTGACATCTGTGGTGTTAAATATAAGAACCAATGGTGTTTGGCACGGCATAGAGCGAGAACCCACGATGCGAAAGACCATAAGTGTCCAAAATGCCCCGAGCAGTTCCAATCACAGTATCATAAACAAAAACATCTAATAAAAATGCACAATGTAGGACACAAATGTAGTTATTGCGGTAAAATGTTTACAAGAAACTCCTTCATGAAAGACCATGTTAGGAGAACACATTTGAAAGAAAAGAACATTCCATGCTCAATATGTAATGAGAAATTTTTCGACAACTATCTTCTGAGGATGCATATGGTAAAGCATGAGGGGGATAGGAAGTTCAGTTGTACAGTCTGCGGAAAAGCCTTTTTGAGACGAAGTAATTTGAGCTCGCATATGGAGATGCATAAGAAGTATGGGCATGTGCAGTTGTAG
- Protein Sequence
- MGLYRTHMYFAIPPCTAFANSKVQNNNFFSDLETEMTKHSASYLRRRNLQILLNHTTLIPFKWRGKYLCFYCGDDTKTPDRLRKHTKAHGPCTDRDRAIRLVKSADVEIKIDVSDVSCEICSESFPFLDEIIDHLILKHQLPYDKDIDIFLSAYRLLDLQCLLCDKSFNYLRKLISHMNVAHPNNSYECAKCIKKFNKKRDLDSHIRFHHKTSHSCTKCDEKFPTNATLQVHRSTAHSSTCNICFQVFSSDGKRLAHLKSDHVSENQCGFCNKILTTKQAFIRHAANCEHKPNEESIIIDEEDKKISVKEIRKGLAAIFNITTALPFKFFMNRLRCFYCTKDFNSCEDLKEHTLNEHPHCDISFKSMRLRNRYDGVQIKVDTSALSCRLCHISLQDLNDVVDHLSKEHKVKCDFSVESNLQPYKLIKDNYPCPICGEVYRYFGLLLKHVSASHSGNKHICMYCGKAFRTDPNLRAHVSRRHKITENHKCSNCDLVFATNDGLPGPYEGCTSERRRKNLKILFNHTTIMPFKWRGKYLCFYCGKNYTEYIEFRKHTKSHGLCTTKDYSLKLIKGNNVEIKIDVSEIGCDICNEPFNRFEEIIDHLISKHNLEYNKNIDIPFQEYRLVDFRCLYCEEQFSYFGYLVKHVNNVHPQNCFICDDCGVTFNKKRDLSIHLRNYHRQGGYPCDLCLKNFETRLMLRRHQNNMHFRHCKSCGLRFASLSLLQKHVLVDHPQNESNMKCSYCSKEFHTSLGLRQHISKCKVKIISQVEPQTSFLNDSNIEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRHHTGLEHPVCDLKSKCMKKCKGERIAVKIDISTLACKICCLPMPNLEDLINHLIAEHKANYDTSISGCLEPFRVIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRARTHDAKDHKCPKCPEQFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCTVCGKAFLRRSNLSSHMEMHKKYGHVQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00447460;
- 90% Identity
- iTF_00375556;
- 80% Identity
- -