Acen058010.1
Basic Information
- Insect
- Atethmia centrago
- Gene Symbol
- -
- Assembly
- GCA_905333075.2
- Location
- HG995396.1:7671843-7675378[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.00066 0.1 14.9 3.5 1 23 10 32 10 33 0.95 2 25 4.1e-05 0.0064 18.7 0.9 1 23 37 60 37 60 0.94 3 25 0.15 23 7.5 0.3 2 23 63 85 62 85 0.95 4 25 0.033 5 9.5 0.1 2 19 91 108 90 111 0.94 5 25 0.0027 0.42 12.9 2.6 2 23 159 181 158 181 0.94 6 25 0.79 1.2e+02 5.2 0.1 2 23 210 232 209 232 0.95 7 25 0.007 1.1 11.7 0.0 1 23 254 277 254 277 0.92 8 25 8.9e-05 0.014 17.6 1.5 1 23 282 305 282 305 0.95 9 25 7.3e-05 0.011 17.9 0.4 1 23 311 334 311 334 0.96 10 25 0.00017 0.026 16.7 1.0 2 23 340 362 339 362 0.97 11 25 0.0027 0.41 13.0 3.2 1 23 399 421 399 421 0.96 12 25 0.036 5.5 9.4 0.1 3 23 450 471 450 471 0.96 13 25 0.0047 0.72 12.2 0.8 1 23 491 514 491 514 0.96 14 25 3.7e-05 0.0057 18.8 0.5 1 23 519 542 519 542 0.96 15 25 0.0014 0.21 13.9 0.8 1 23 547 570 547 570 0.96 16 25 0.00044 0.069 15.4 0.3 3 23 574 595 573 595 0.96 17 25 0.011 1.7 11.0 1.3 2 21 603 622 602 623 0.94 18 25 0.009 1.4 11.3 3.3 1 23 678 701 678 701 0.94 19 25 0.85 1.3e+02 5.1 0.0 2 23 774 797 773 797 0.94 20 25 1.7e-05 0.0027 19.8 0.1 3 23 804 825 803 825 0.94 21 25 0.0022 0.34 13.2 3.2 2 23 830 852 829 852 0.94 22 25 0.0098 1.5 11.2 5.1 1 23 857 880 857 880 0.96 23 25 2.1e-05 0.0033 19.6 5.0 1 23 884 907 884 907 0.97 24 25 0.00025 0.039 16.2 0.3 2 23 914 935 913 935 0.96 25 25 8.9e-06 0.0014 20.8 0.6 1 23 941 963 941 963 0.98
Sequence Information
- Coding Sequence
- ATGAATACCGCTcatccaaataacagctttGAGTGTGCCGAATGTAAAAagaactttaataaaaaaagggaTTTGGATTCGCACATAAGATTCCATCATAAGAAGTACCATTCTTGTACTAAATGCGATGAAACGTTCCCAACAAACTCCGCGTTACAGATTCATAGGTCTAACGCCCATTCTTCGACGTGTAACATCTGCTTCCAAGTATTTGCGTCAGACGGCAAGCGGTTAGCTCATCAGAAATCTGACCATGACTCTAATCAGAGCCAATGTGGATTTTGCAATAAAGTTCTAACAACAAAACAAGCTTTTATAAGACATGCTGCAAATTGCGAACTTAAACCTCAGGAAGAAACCGTCATAATAGATGACGAAGACAAAAAAATGTCCGTCAAAGAAATCAGAAAAAGTTTAGCATGTATCTTTAACATGACTACTGCACTACCTTTCAAGTTCTTTATGAATAGGTTACGATGTTTCTATTGCACGAAAGACTTCACCTCATGCGAAGATTTAAAAGAACATACATCAATAGAACATCCTCACTGCGATATATCCTTTAAATCCATGAGATTAAGGAACAGATATGACGGTGTCCAAATCAAAGTTGACACTTCTTCTTTGTCTTGTAAACTTTGCAACGTTGCCTTGCAGGATTTGAACGACTTGATTGACCATTTGAGCAAAGAGCATAAGGTGAAATGCGACTTTTCTGTTGAGAGTAATCTGCAGCCGTTCAAACTGATTAAAGACAATTACCCTTGTCCCGTTTGCGGAGAAGTTTACCGATATTTTGGCGTTTTACTCAAGCACGTCAGCGCGTCTCATAGCGGCAATAAACATATATGCATGTTTTGCGGCAAATCGTTCAGAACTGACCCTAATCTAAGAGCTCATATTTCAAGGCGGCATAAAATCGCTGATAATCACAAGTGCGGAAATTGCGATCTCGTTTTTGGGACTAACAGTGCGTTAAGAAATCATCAAGGTACTGCTCACGGTACAAAATCAGTTCAATGCTTCGAATGTTCAGAAAAATTCACCTCCCAGTATTCAATGCAACGACACTTGATCACGTCCCACGATGGTTTGCCAGGGCCGTACGAAGGCTGTACCTCTGAGCGCCGACGGAAAAACTTGAAAATACTGTTCAACCACACCACGATCATGCCATTTAAATGGCGGGGCAAATACCTGTGCTTCTACTGTGGTAAAAACTATACCGAATACACAGAGTTTAGAAAGCATACAAAATCCCACGGACTGTGCACCACTAAAGATTACTCCCTCAAACTAATCAAAGGAAATAACATCGAAATTAAAATCGACGTCTCGGAAATCGGATGCGATATCTGCAATGAACCCTTCAGCAGATTCGAAGAAATAATCGATCATTTGATCAGCAAACACAATATGGAATACaacaaaaatatcgatatacCATTCCAGGAATACCGATTAGTCGATTTTCGATGTTTGTACTGCGAAGAACAGTTTTCTTATTTCGGATATTTAGTTAAACATGTTAATAACATTCACCCGCAGAACTGTTTTATTTGTGATGATTGTGGAGTTACTTTCAACAAGAAGAGGGACTTGTCTATACATTTGAGGAATTATCACAGACTAGGAGGGTATCCATGCGATTTGTGCTTGAAGAACTTCGAAACTCGCCTTATGTTGCGGAGGCATCAAAATAACATGCATTTTAGGAACTGTAAGAGCTGTGGTTTGCGTTTCGCATCCCTTTCTCTTTTACAAAAACATGTACAAGTTGATCATCCCCAAAATGAGAGTAATATGAAGTGCAGTTACTGCTCCAAAGAGTTCCACACTTCTTTAGGCTTAAGACAACATATAAGCAAATGTAAAGTCAAAATCATTTCTCAGGTTGAACCCCCCCACACTTCTTTCCTAAACGATAGTAACATAGAACCTAAGAAAAAGCAAAATATTCTACAAATTAGACAAAATATACAGTGTGTACTCAACATGTCGACTGCTGTGCCTTTCAAATTCTTTTCCAAATACTCCTGCTTTTATTGCTCAAAGAAATTCGTAGAATTTGACGAGTTACGCCACCATACCAGTCTTGAACACCCTGTGTGCGATTTAAAGTCCAAATGCATGAAAAAATGCAAAGGAGAAAGGATAGctgtcaaaattgacatatcTGCTTTAGCTTGTAAAATATGTTGCCTCTCTATGCCTAATTTAGAAGATTTAATCAACCATTTAATAAACGAACACAAGGCAAACTATGACACGTCAATTTCGGGATGTCTAGAGCCTTTCCGAGTTATAAAAGATAATATGCCCTGCCCCATATGCCCGGATACCGTCTTCCGATACTTCGGCATTTTGCTCCGACATATGAACTCCGAACACAGCAACAACAATCGAATCTGTGACTTCTGCGGTCGAAGTTTCCGTAACGCGGCGAACTTAAATGTGCACATAACCTACGCACACACAGGTTCCTGCGAATGTGACATATGTGGGATGAAATACAAGAACCAGTGGTGTTTGGCGCGACATAGAGCGAGGACACACGATGCTAAAGACCACAAATGTCCAAAATGTCCCGAGCAGTTCCAATCACAGTACCATAAGCAAAAACACTTAATAAAAATGCATAACGTGGGCCATAAGTGTAGTTACTGCGGGAAAATGTTTACACGAAACTCTTTCATGAAAGACCACGTTAGGCGAACACATTTGAAGGAAAAGAACATTCCTTGCTCCATTTGTAATGAGAAGTTTTTCGATAATTATCTTTTGAGGATGCATATGGTAAAACACGAGGGGGATAGGAAATTTAGTTGCACTGTTTGTGGAAAAGCCTTTTTAAGACGAAGTAATTTGAGCTCGCATATGGAGATGCATAAAAAGTACGGGCATGTGCAGTTGCAAATATAA
- Protein Sequence
- MNTAHPNNSFECAECKKNFNKKRDLDSHIRFHHKKYHSCTKCDETFPTNSALQIHRSNAHSSTCNICFQVFASDGKRLAHQKSDHDSNQSQCGFCNKVLTTKQAFIRHAANCELKPQEETVIIDDEDKKMSVKEIRKSLACIFNMTTALPFKFFMNRLRCFYCTKDFTSCEDLKEHTSIEHPHCDISFKSMRLRNRYDGVQIKVDTSSLSCKLCNVALQDLNDLIDHLSKEHKVKCDFSVESNLQPFKLIKDNYPCPVCGEVYRYFGVLLKHVSASHSGNKHICMFCGKSFRTDPNLRAHISRRHKIADNHKCGNCDLVFGTNSALRNHQGTAHGTKSVQCFECSEKFTSQYSMQRHLITSHDGLPGPYEGCTSERRRKNLKILFNHTTIMPFKWRGKYLCFYCGKNYTEYTEFRKHTKSHGLCTTKDYSLKLIKGNNIEIKIDVSEIGCDICNEPFSRFEEIIDHLISKHNMEYNKNIDIPFQEYRLVDFRCLYCEEQFSYFGYLVKHVNNIHPQNCFICDDCGVTFNKKRDLSIHLRNYHRLGGYPCDLCLKNFETRLMLRRHQNNMHFRNCKSCGLRFASLSLLQKHVQVDHPQNESNMKCSYCSKEFHTSLGLRQHISKCKVKIISQVEPPHTSFLNDSNIEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRHHTSLEHPVCDLKSKCMKKCKGERIAVKIDISALACKICCLSMPNLEDLINHLINEHKANYDTSISGCLEPFRVIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGMKYKNQWCLARHRARTHDAKDHKCPKCPEQFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCTVCGKAFLRRSNLSSHMEMHKKYGHVQLQI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00447460;
- 90% Identity
- iTF_00447460; iTF_00446419; iTF_00952901; iTF_00037072; iTF_01028529; iTF_01440319; iTF_01117568;
- 80% Identity
- -