Ctra044366.1
Basic Information
- Insect
- Cosmia trapezina
- Gene Symbol
- -
- Assembly
- GCA_905163495.1
- Location
- LR991047.1:9051195-9054727[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.026 3.5 9.8 5.3 1 21 10 30 10 33 0.94 2 22 3.5e-05 0.0047 18.8 0.9 1 23 37 60 37 60 0.94 3 22 0.12 17 7.6 0.3 2 23 63 85 62 85 0.95 4 22 0.049 6.6 8.9 1.3 2 20 91 109 90 114 0.91 5 22 0.0052 0.71 11.9 3.0 2 23 159 181 158 181 0.92 6 22 2.1 2.8e+02 3.8 0.1 2 23 210 232 209 232 0.94 7 22 0.0015 0.2 13.6 0.1 1 23 254 277 254 277 0.92 8 22 0.0023 0.31 13.1 3.2 1 23 324 346 324 346 0.96 9 22 0.03 4.1 9.6 0.1 3 23 375 396 375 396 0.96 10 22 0.0039 0.53 12.3 0.8 1 23 416 439 416 439 0.96 11 22 3.1e-05 0.0042 18.9 0.5 1 23 444 467 444 467 0.96 12 22 0.0011 0.16 14.0 0.8 1 23 472 495 472 495 0.96 13 22 0.00063 0.085 14.8 1.1 3 23 499 520 498 520 0.96 14 22 0.0094 1.3 11.1 1.3 2 21 528 547 527 548 0.94 15 22 0.0076 1 11.4 3.3 1 23 603 626 603 626 0.94 16 22 0.72 97 5.2 0.0 2 23 699 722 698 722 0.94 17 22 1.5e-05 0.002 20.0 0.1 3 23 729 750 728 750 0.94 18 22 0.0026 0.35 12.9 2.8 2 23 755 777 754 777 0.94 19 22 0.0082 1.1 11.3 5.1 1 23 782 805 782 805 0.96 20 22 1.8e-05 0.0024 19.7 5.0 1 23 809 832 809 832 0.97 21 22 0.00021 0.028 16.3 0.3 2 23 839 860 838 860 0.96 22 22 7.5e-06 0.001 20.9 0.6 1 23 866 888 866 888 0.98
Sequence Information
- Coding Sequence
- ATGAATGTCGCTCATCCAAATAATAGCTTTGAGTGTGTCGAATGTAAAAAGAACTTTAATAAAAAGAGGGATTTGGATTCGCACATAAGATGTCATCATAAGAAGTACCATTCTTGTACCAAATGCGATGAAACATTCCCAACAAACTCCGCATTACAGATTCATAGGTCTAACGCTCATTCTTCGACTTGTAACATCTGCTTCCAAGTATTTGCGTCAGACGGCAAGCGGTTAGCTCATCAGAAATCTGACCATGATTCTAATCAGAGCCAATGTGGATTTTGCAATAAAGTTCTAACAACAAAGCAAGCCTTTATAAGACATGCTGCAAATTGCGAACATAAACCTCAGGTAGAAACTGTAATTATAGATGacgaagacaaaaaaatatgcGTTAAAGATATAAGAAAAAGTTTAGCATGCATCTTTAACATGACTACCGCACTTCCTTTCAAATTCTTTATGAATAGGTTACGATGTTTCTATTGCACGAAAGACTTCACCTCATGCGAAGATTTAAAACAACACTCATCGATAGAACATCCTCACTGCGATATATCCTTTAAATGTATGAAGTTAAGAAACAGATATGACGGTGTCCAAATCAAAGTTGATACTTCTTCTTTGTCTTGTAGACTATGCCAAGTCACCTTGCAAGATTTGAACGACTTGATTGACCATTTAAGCAAAGAGCATAAGGTGAAATGCGACTTTTCTGTCGAGAGTAATCTGCAGCCGTTCAAATTGATCAAAGACAACTACCCTTGCCCATTTTGCGGGGAAGTCTACAGATATTTCGGTCTCTTACTCAAGCACGTTAGTGCGTCTCATAACGGCAATAAACATATATGCATGTATTGCGATGGTCTGCCAGGGCCGTACGAAGGCTGTACCTCTGAGCGCCGACGGAAAAACTTGAAAATACTGTTCAACCACACTACGATCATGCCATTTAAATGGCGGGGCAAATACCTTTGCTTTTACTGCGGAAAAAACTATACCGAATACACAGAATTTAGAAAGCATACAAAATCCCACGGACTGTGCACCACTAAAGATTACTCCCTAAAATTAATCAAAGGAAATAACATCGAAATTAAAATTGACGTCTCAGAAATCGGCTGTGACATCTGCAATGAACCATTCAGCAGATTCGAAGAAATAATCGATCATTTGATCAGCAAACACAATATGGAATACAACAAAAATATCGATATACCCTTCCAGGAATATCGATTAGTCGATTTTCGATGTTTGTACTGCGAAGAACAGTTTTCTTATTTCGGTTATTTGGTTAAACACGTTAATAACATTCACCCGCAGAACTGTTTCATTTGTGATGATTGTGGAGTTACTTTCAACAAGAAGAGGGACTTGTCTATACATTTGAGGAATTATCACAGACAAGGAGGGTATCCATGCGATTTGTGCTTGAAGAACTTCGAAACTCGCCTTATGTTGCGGAGGCATCAAAATAACATGCATTTTAGGCACTGTAAGAGCTGCGGTTTGCGTTTCGCGTCCCTTTCTCTTTTACAAAAACATGTACAAGTTGATCATCCCCAAAATGAGAGTAATATGAAGTGTAGTTACTGCTCCAAAGAGTTCCACACTTCTTTAGGTTTAAGACAGCATATAAGCAAATGTAAAGTCAAAATCATTTCTCAGGTCGAGCCACCCCACACGTCTTTCCTAAACGACAGTAACATAGAACCTAAGAAAAAGCAGAACATCCTACAAATAAGACAGAATATACAGTGTGTACTCAACATGTCGACCGCTGTGCCTTTTAAATTCTTTTCCAAGTACTCCTGCTTTTATTGCTCAAAGAAATTCGTTGAATTTGACGAGTTACGCCACCATACCAGTCTTGAACATCCTGTATGCGATTTGAAGTCCAAATGCATGAAGAAATGCAAAGGAGAAAGGATAGCTGTCAAAATTGACATATCAGCATTAGCTTGTAAAATATGTTGCCTCCCTATGCCTAATTTAGAAGATTTAATCAACCATTTAATAAATGAACATAAAGCTAACTATGATACGTCAATTATGGGCTGTTTAGAGCCTTTCCGAGTTATAAAAGACAACATGCCATGTCCTATATGCCCGGATACCGTCTTCCGTTATTTCGGCATTTTGCTCCGACACATGAACTCCGAACACAGCAACAACAACCGAATCTGTGACTTCTGCGGTCGAAGTTTCAGGAACGCGGCGAATCTAAACGTGCACATAACTTACGCACATACAGGTTCCTGCGAATGTGACATTTGTGGTGTCAAATACAAGAACCAGTGGTGTTTGGCGCGACATAGAGCGAGGACACACGATGCGAAAGACCACAAATGTCCAAAATGTCCCGAGCAGTTCCAATCACAGTACCATAAGCAAAAACACTTAATAAAAATGCATAATGTGGGCCATAAATGTAGTTACTGCGGGAAAATGTTTACGAGAAACTCTTTTATGAAAGACCATGTTAGGCGGACACATTTGAAGGAGAAGAACATTCCTTGCTCTATTTGTAATGAgaagttttttgataattatctcCTGAGAATGCATATGGTTAAACATGAGGGGGATAGGAAATTCAGTTGCACTGTTTGTGGCAAAGCCTTTTTAAGACGAAGTAATTTGAGCTCGCATATGGAGATGCATAAAAAGTATGGGCATGTGCAATTGTAG
- Protein Sequence
- MNVAHPNNSFECVECKKNFNKKRDLDSHIRCHHKKYHSCTKCDETFPTNSALQIHRSNAHSSTCNICFQVFASDGKRLAHQKSDHDSNQSQCGFCNKVLTTKQAFIRHAANCEHKPQVETVIIDDEDKKICVKDIRKSLACIFNMTTALPFKFFMNRLRCFYCTKDFTSCEDLKQHSSIEHPHCDISFKCMKLRNRYDGVQIKVDTSSLSCRLCQVTLQDLNDLIDHLSKEHKVKCDFSVESNLQPFKLIKDNYPCPFCGEVYRYFGLLLKHVSASHNGNKHICMYCDGLPGPYEGCTSERRRKNLKILFNHTTIMPFKWRGKYLCFYCGKNYTEYTEFRKHTKSHGLCTTKDYSLKLIKGNNIEIKIDVSEIGCDICNEPFSRFEEIIDHLISKHNMEYNKNIDIPFQEYRLVDFRCLYCEEQFSYFGYLVKHVNNIHPQNCFICDDCGVTFNKKRDLSIHLRNYHRQGGYPCDLCLKNFETRLMLRRHQNNMHFRHCKSCGLRFASLSLLQKHVQVDHPQNESNMKCSYCSKEFHTSLGLRQHISKCKVKIISQVEPPHTSFLNDSNIEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRHHTSLEHPVCDLKSKCMKKCKGERIAVKIDISALACKICCLPMPNLEDLINHLINEHKANYDTSIMGCLEPFRVIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRARTHDAKDHKCPKCPEQFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCTVCGKAFLRRSNLSSHMEMHKKYGHVQL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00447460;
- 90% Identity
- iTF_01340458; iTF_00374455; iTF_01064881;
- 80% Identity
- -