Bvim021003.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- -
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000209.1:667060-670681[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.0012 0.16 14.0 0.4 2 23 12 34 11 34 0.95 2 25 0.00065 0.093 14.8 2.5 1 23 39 61 39 62 0.96 3 25 1.2e-05 0.0017 20.3 0.3 1 23 66 89 66 89 0.95 4 25 0.14 19 7.5 0.3 2 23 92 114 91 114 0.95 5 25 2 2.9e+02 3.8 1.5 2 20 120 138 119 143 0.90 6 25 0.0012 0.18 13.9 2.8 2 23 188 210 187 210 0.94 7 25 1.2 1.7e+02 4.5 0.1 2 23 239 261 238 261 0.94 8 25 0.01 1.4 11.0 0.0 1 23 283 306 283 306 0.91 9 25 3e-05 0.0042 19.0 0.9 1 23 311 334 311 334 0.95 10 25 0.00063 0.09 14.8 0.1 1 20 340 359 340 361 0.95 11 25 0.0025 0.35 13.0 3.2 1 23 396 418 396 418 0.96 12 25 0.033 4.7 9.4 0.1 3 23 447 468 447 468 0.96 13 25 0.0043 0.61 12.2 0.8 1 23 488 511 488 511 0.96 14 25 3.4e-05 0.0049 18.8 0.5 1 23 516 539 516 539 0.96 15 25 0.0022 0.32 13.1 2.3 1 23 544 567 544 567 0.98 16 25 0.00069 0.098 14.7 1.1 3 23 571 592 570 592 0.96 17 25 0.012 1.7 10.8 0.8 2 21 600 619 599 620 0.94 18 25 0.0084 1.2 11.3 3.3 1 23 675 698 675 698 0.94 19 25 0.79 1.1e+02 5.1 0.0 2 23 771 794 770 794 0.94 20 25 1.6e-05 0.0023 19.8 0.1 3 23 801 822 800 822 0.94 21 25 0.0029 0.41 12.8 2.8 2 23 827 849 826 849 0.94 22 25 0.0091 1.3 11.2 5.1 1 23 854 877 854 877 0.96 23 25 2e-05 0.0028 19.6 5.0 1 23 881 904 881 904 0.97 24 25 0.00023 0.033 16.2 0.3 2 23 911 932 910 932 0.96 25 25 8.2e-06 0.0012 20.8 0.6 1 23 938 960 938 960 0.98
Sequence Information
- Coding Sequence
- ATGCTGTTATCAGCATACAGACTGTTAGATCTTCAGTGTCTCTTTTGCGACAAAACCTTCAATTACTTACGTAAATTAATCAGCCATGTGAATGTCGCTCATCCAAATAACAGCTTTGAGTGTGCCGAATGTAAaaagaactttaataaaaagAGGGACATGGATTCGCACATAAGAATCCATCATAAGAAATACTATTCTTGTACCAAATGCGATGAGACGTTTCCAACAAACTCCGCGTTACAGATTCATAGGTCTAACGCTCATTCTTCGACTTGTAACATCTGCTTCCAAGTATTTGCATCAGACGGCAAGCGGTTAGCTCATCAGAAATCTGACCACGATTCTAATCAGAGCCAATGTGGATTTTGCAATAAAGTTCAAACAACAAAGCAAGCCTTTATTAGACATGCTGCAAATTGCGAACATAAACCTCAGGAAGAAACTGTCATAATAGACGACGAAGACAAAAAAATAACCCTTAAAGAAATAAGAGAAAGTTTAGCATGCATCTTTAACATGACTACCGCACTTCCTTTCAAATTCTTTATGAATAGGTTACAATGTTTCTATTGCACGAAAAACTTCACCTCATGCGAGGACTTGAAAGAGCATACGTCGATAGAACATCCACACTGCGACATTTCCTTTAAGTCTATGAGGTTAAGGAACAGATATGACGGTGTCCAAATCAAAGTAGATACTTCTTCCTTGTCTTGTAGACTATGCAACATCCCCTTGCAGGATTTAAACGATTTGACTGACCATTTGAGCAAAGAGCATAAAGTGAAATTCGACTTTTCTGTCGAGAGTAATCTGCAGCCGTTTAAACTGATTAAAGACAACTACCCTTGCCCTATTTGTGGCGAAATCTACAGATATTTTGGCGTCTTACTCAAGCACGTTAGTGCGTCGCATAGCGGCAATAAACATATATGCATGTACTGCGGCAAAGCGTTCAGAACTGACCCTAATCTTAGAGCTCATATTTCAAGGCGTCATAAAATCACTGATAATCACAAATGCGGTGATTGTGATCAAGTTTTTGGGACTAATAATGCGTTAAGAATTCACCAAGATGGTCTGCCAGGGCCGTACGAAGGCTGTACCTCTGAGCGTCGACGGAAAAACTTGAAAATACTGTTCAACCACACCACGATCATGCCATTTAAATGGCGGGGCAAATATCTTTGCTTCTATTGCGGAAAAAACTATACAGAATACACGGAATTTAGAAAACATACAAAATCCCACGGACTGTGCACCACTAAAGATTACTCCCTAAaactaattaaaggaaacaacatcgaaattaaaatcGACGTCTCAGAAATCGGTTGTGATATCTGCAATGAACCCTTTAGCAGATTCGAAGAAATAATCGATCATTTGATCAGCAAACACAATATGGAATACaacaaaaatatcgatatacCCTTCCAGGAATATCGACTAGTCGATTTTCGTTGTTTGTACTGCGAAGAACAGTTTTCTTATTTCGGATACTTGGTTAAACATGTTAACAACGTTCACCCGCAGAACTGTTTTATTTGTGACGATTGTGGAGTTACTTTCAATAAGAAAAGAGACTTGTCCATACATTTAAGGAATTATCACAGACAGGGTGGATACCCCTGCGATTTGTGCTTGAAGAACTTCGAAACTCGCCTTATGTTGCGGAGGCATCATAATACCATGCATTTTAGGCACTGTAAGAGCTGCGGTTTGCGTTTCGCCTCCCTCTCTCTTTTACAAAAACATGTACAAGTTGATCATCCCCAAAATGAGAGTAATATGAAGTGCAGTTACTGCTCCAAAGAGTTTCACACTGCTTTAGGTTTAAGACAGCACATAAGCAAATGTAAGGTCAAAATTATTTCTCAGGTCGAACCCCCCCATACTTCTTTTCTAAACGACAGTAACATAGAACctaagaaaaaacaaaatatactaCAAATAAGACAGAATATACAGTGCGTACTCAACATGTCGACTGCTGTGCCTTTCAAATTCTTTTCCAAATACTCCTGCTTTTATTGCTCAAAGAAATTTGTTGAATTTGATGAGTTACGCCACCATACTAGCCTTGAACATACTGAATGCGATTTGAAGTCCAAATGCATGAAGAAATGCAAAGGAGAAAGGATAGCTGTCAAAATTGACATATCTGCGTTAGCTTGTAAAATATGTTGCCTCCCTATGCCTAATTTAGAAGATTTAATCAACCATTTAATAAACGAACATAAAGCGAACTATGATACTTCAATTCCCGGGTGTTTAGAGCCGTTCCGGCTTATAAAAGACAACATGCCTTGTCCTATATGCCCGGATACCGTCTTCCGATACTTCGGCATTTTGCTCCGACACATGAACTCCGAACACAGCAACAACAACCGAATCTGTGACTTCTGCGGTCGAAGCTTCAGGAACGCGGCGAATCTGAACGTGCACATAACTTACGCACACACAGGTTCCTGCGAATGTGACATTTGTGGAGTCAAATATAAGAACCAATGGTGCTTGGCGCGACATAGAGCGAGGACACACGATGCGAAGGACCACAAATGTCCAAAATGTCCCGAGCAGTTCCAGTCACAGTACCATAAACAGAAACACTTAATAAAAATGCATAATGTAGGACATAAGTGCAGTTACTGCGGGAAGATGTTCACAAGAAACTCTTTCATGAAAGACCATGTTAGGCGAACACATTTGAAGGAAAAGAACATTCCTTGCTCCATTTGTAATGAGAAGTTTTTCGACAATTATCTTTTGAGGATGCATATGGTGAAACACGAGGGGGATAGGAAATTTAGTTGCACTGTTTGTGGAAAAGCCTTTTTAAGACGAAGTAATTTGAGTTCGCATATGGAGATGCATAAAAAGTATGGCCATGTGCAGTTGCAGATTTAA
- Protein Sequence
- MLLSAYRLLDLQCLFCDKTFNYLRKLISHVNVAHPNNSFECAECKKNFNKKRDMDSHIRIHHKKYYSCTKCDETFPTNSALQIHRSNAHSSTCNICFQVFASDGKRLAHQKSDHDSNQSQCGFCNKVQTTKQAFIRHAANCEHKPQEETVIIDDEDKKITLKEIRESLACIFNMTTALPFKFFMNRLQCFYCTKNFTSCEDLKEHTSIEHPHCDISFKSMRLRNRYDGVQIKVDTSSLSCRLCNIPLQDLNDLTDHLSKEHKVKFDFSVESNLQPFKLIKDNYPCPICGEIYRYFGVLLKHVSASHSGNKHICMYCGKAFRTDPNLRAHISRRHKITDNHKCGDCDQVFGTNNALRIHQDGLPGPYEGCTSERRRKNLKILFNHTTIMPFKWRGKYLCFYCGKNYTEYTEFRKHTKSHGLCTTKDYSLKLIKGNNIEIKIDVSEIGCDICNEPFSRFEEIIDHLISKHNMEYNKNIDIPFQEYRLVDFRCLYCEEQFSYFGYLVKHVNNVHPQNCFICDDCGVTFNKKRDLSIHLRNYHRQGGYPCDLCLKNFETRLMLRRHHNTMHFRHCKSCGLRFASLSLLQKHVQVDHPQNESNMKCSYCSKEFHTALGLRQHISKCKVKIISQVEPPHTSFLNDSNIEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRHHTSLEHTECDLKSKCMKKCKGERIAVKIDISALACKICCLPMPNLEDLINHLINEHKANYDTSIPGCLEPFRLIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRARTHDAKDHKCPKCPEQFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCTVCGKAFLRRSNLSSHMEMHKKYGHVQLQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00447460;
- 90% Identity
- iTF_00238006;
- 80% Identity
- -