Celi008725.1
Basic Information
- Insect
- Crocallis elinguaria
- Gene Symbol
- -
- Assembly
- GCA_907269065.1
- Location
- OU026073.1:15569232-15572730[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0023 0.18 12.9 5.5 1 23 157 180 157 180 0.95 2 17 0.00046 0.036 15.1 1.5 1 23 189 212 189 212 0.96 3 17 0.0085 0.66 11.2 0.3 3 23 226 247 225 247 0.97 4 17 0.00027 0.021 15.9 0.8 1 23 256 279 256 279 0.97 5 17 0.0008 0.063 14.4 7.1 1 23 292 315 292 316 0.97 6 17 0.00035 0.027 15.5 0.7 3 23 348 369 347 369 0.98 7 17 0.0012 0.092 13.9 1.5 2 23 379 401 378 401 0.96 8 17 0.099 7.7 7.8 2.4 2 20 406 424 405 426 0.91 9 17 0.00059 0.046 14.8 0.5 2 21 431 450 430 453 0.94 10 17 0.054 4.2 8.6 0.9 3 23 463 484 462 484 0.93 11 17 0.00074 0.057 14.5 3.8 1 23 489 512 489 512 0.93 12 17 5.2e-05 0.004 18.1 1.7 1 23 523 546 523 546 0.98 13 17 0.021 1.6 9.9 0.4 1 23 566 589 566 589 0.91 14 17 1.5 1.2e+02 4.1 2.3 2 23 596 616 595 616 0.87 15 17 0.0062 0.48 11.6 2.3 2 23 622 643 621 643 0.97 16 17 0.01 0.8 10.9 0.2 1 23 709 731 709 731 0.97 17 17 0.084 6.5 8.0 1.9 1 23 737 760 737 760 0.97
Sequence Information
- Coding Sequence
- ATGTCCCTGATACCAGAACCTCTAATAAAACAAGAAAAAGATGTGCGTAAAGATCCCACCAGTTTCCTCCCAGAAGAAGAGATGTCCTATGAACTAAAGAAGAAGAAAAAAAAGAAAAAGAAGAAGAAGAAACAAGAAGACCCATTTAAGGATGTTGAGGAGAAAATGGCCGTGGTTAGAGAGCCAGATGTAACGGCTCTTGATCCTGATATAGGGATGAGTATGGATCCAGAGGTTACGATTAAGGTCGAGAATATTGAAGTGGACTTGGATTTTAATGACTTCATTCCCAACGATTACGAGCCCCATCCCTGTGACAATGCCATGTTAGAGCCTGAAGTAAAACTCGAGGAGCAGAGCCAAGATGCTGTATTACTTACTTTTGAAAGCGTCATCAATGAACGAAAGTACAAAGAGGAAGTCGACGTGAAAGCAGAAGAAACCGAAAATGAACCAGTCACTCATAACCACTTCTGCAAAGTGTGCCATTTAGTCTTCAAAAATCCTAGAACACTGCTCATGCATCAGAAAAGAAAACACAAGCGTTTCAGACGGTTTTTCCAACATATATGCGATCACTGTGGCATGTCTTACGATGCTAAGAACAGTTTGGTCGCTCATATTCGAAGGAAACACGGGCCAGAGGCAGACAAAGATGATAAGCTAGAACGAGCATGCGATATTTGTGCATTAGTCTTCAAAGGCATATCTAGACTCCGCATGCATATGCGTAGGAAGCATGGAGCATATGAAGATTCGTTCAAACATGTTTGTGAAGACTGCGGACTAACATATGATAAGTATGCTAGCTTGATTGTGCACAGACGAAGAAAACATAGCAATACACCTAAAGCTTTGAAAGCAAATCAATGGTATACATGCCCGTTTTGTTCAAAGATATTTTGCAGAAGAGAGACATACTCCCGTCATATTCAAAGGAAACATCACACCGAAGACGATGATAAAGTCAAAAGTGAAAATACAGATCCAGACGAACTTTTAAAGAAAAACGGTATAAATGAAAAATCTGGAGAAATCTTATGCAGTTACTGTCCTCTTATGTTTTCTTCAGTAATGTACTTAAAGCTGCATATGAGGAGAAAGCATAATGTTTTGTCAGATGACTTTAGATTGAAATGTAAGCTTTGTAACCTGTCATATGACAAAGTAGAGAGTTTAAAACGCCATGTGAGACGGAAACATGATGCGGGGACATATTGCGAGTTATGCAGTAAACACTTCTCTTCTAGAGAAATGTACTTAAACCATTCACACACGAAAGTTATTAAGGAGTGCAATATTTGTGGACTTATTTTTGCCAGCCAAGGCGGTCTGGCAAAGCATTTAAGATGTACGCACAAAGTAGCTACAGAAAAGACTGTTTTTTGTACGGTTTGTAACCAAGGTTTCTATGATAAGCGCCAGCTCAAACCTCATTTTATGAGAGTCCATTTACAGGTCAGTTATACATGCAAATTTTGCAATAAAATGTTTAAAGCGAAGGAAAGTTACAGACGTCACCTCATTTTTAAGCACCCAGAGAGTTATGTTGATGAAAGGAAAACGCACCAGTGCGAGAAATGTCCGGAGATATTTGTTAATGAATTTGAACTGTGCAAGCATATCAACACAGCTCACCGAGAAACTACAGACATTGTTATTAAAAAGGAAGAGAAAGATTTCATCAAGGATTTGTTCCAGTGTACAAAGTGTACCGATGAATACAGCACATGGGAGGAATTAAGATTGCATTTTGAGCTGATACATCATGCAACTGAAGAAACACAGTGCCAAAAGTGCGGTGAATTAATGCCCAGAGGTGAGCTTCAAAAACATATGAAAGTCCATGAAGAAACTGAAATGACTTGCCGATACTGTGAGTTCAAAACAAAGAATCGCATAAGTTTGACACAGCATATGCTTCGACACAAAAATGCGGAGACCATACACTGTGATTTTAATGGATGTCGATATAAGACGTTCTACGAAGATGCAATGTTGAAGCATAAAAGAAGGCACGTTGATTTAGGTGTGAAATTGCAATGTACAAGTTGCCCGTTCCAAACTATGAACAAGTACATATTGAAATATCATGAAGAAGCGCACTCTACCGGCAAAAAGCGGTATTCTTGCGATAAATGCGATTATGCTACGATACTACCCGCAAATTTGGTTCAACATAAATACAAACACGCAACAGAAAAGAGGTTTAAATGTGAAGTCTGTCCTTTTGCAACGAAGTATAACACTTCTTTACGTTTCCATGTTAGAAAGAAACACTGTGATCTGCCCACGTTAAGGTAG
- Protein Sequence
- MSLIPEPLIKQEKDVRKDPTSFLPEEEMSYELKKKKKKKKKKKKQEDPFKDVEEKMAVVREPDVTALDPDIGMSMDPEVTIKVENIEVDLDFNDFIPNDYEPHPCDNAMLEPEVKLEEQSQDAVLLTFESVINERKYKEEVDVKAEETENEPVTHNHFCKVCHLVFKNPRTLLMHQKRKHKRFRRFFQHICDHCGMSYDAKNSLVAHIRRKHGPEADKDDKLERACDICALVFKGISRLRMHMRRKHGAYEDSFKHVCEDCGLTYDKYASLIVHRRRKHSNTPKALKANQWYTCPFCSKIFCRRETYSRHIQRKHHTEDDDKVKSENTDPDELLKKNGINEKSGEILCSYCPLMFSSVMYLKLHMRRKHNVLSDDFRLKCKLCNLSYDKVESLKRHVRRKHDAGTYCELCSKHFSSREMYLNHSHTKVIKECNICGLIFASQGGLAKHLRCTHKVATEKTVFCTVCNQGFYDKRQLKPHFMRVHLQVSYTCKFCNKMFKAKESYRRHLIFKHPESYVDERKTHQCEKCPEIFVNEFELCKHINTAHRETTDIVIKKEEKDFIKDLFQCTKCTDEYSTWEELRLHFELIHHATEETQCQKCGELMPRGELQKHMKVHEETEMTCRYCEFKTKNRISLTQHMLRHKNAETIHCDFNGCRYKTFYEDAMLKHKRRHVDLGVKLQCTSCPFQTMNKYILKYHEEAHSTGKKRYSCDKCDYATILPANLVQHKYKHATEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01172614; iTF_00143295; iTF_00143268; iTF_00896169; iTF_00913858; iTF_00055881; iTF_00818541;
- 90% Identity
- -
- 80% Identity
- -