Hfas011291.1
Basic Information
- Insect
- Hylaea fasciaria
- Gene Symbol
- -
- Assembly
- GCA_905147375.1
- Location
- LR990218.1:5666179-5670467[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00042 0.028 15.0 4.9 1 23 156 179 156 179 0.96 2 18 0.0002 0.014 16.0 1.9 1 23 188 211 188 211 0.96 3 18 0.0023 0.16 12.7 0.3 3 23 225 246 224 246 0.97 4 18 0.00021 0.014 16.0 0.9 1 23 255 278 255 278 0.97 5 18 0.00023 0.016 15.8 7.1 1 23 290 313 290 314 0.97 6 18 5.4e-05 0.0036 17.8 0.5 2 23 343 365 342 365 0.97 7 18 0.00098 0.066 13.9 1.5 2 23 375 397 374 397 0.96 8 18 0.014 0.95 10.2 0.7 2 19 402 419 401 421 0.93 9 18 0.0015 0.1 13.2 0.6 2 21 427 446 426 449 0.94 10 18 0.0082 0.55 11.0 0.4 3 23 459 480 458 480 0.96 11 18 0.00016 0.011 16.3 2.8 1 23 485 508 485 508 0.93 12 18 0.0043 0.29 11.8 6.4 1 23 519 542 519 542 0.96 13 18 0.21 14 6.5 0.8 1 23 565 588 565 588 0.91 14 18 2.4 1.6e+02 3.2 2.5 2 23 595 615 594 615 0.86 15 18 0.095 6.4 7.6 2.8 2 23 621 642 620 642 0.97 16 18 2.7 1.8e+02 3.0 0.3 2 23 680 701 679 701 0.91 17 18 0.016 1.1 10.0 0.1 1 23 708 730 708 730 0.96 18 18 0.069 4.7 8.0 1.9 1 23 736 759 736 759 0.97
Sequence Information
- Coding Sequence
- ATGTCCAAACTAGAAGCTCCGGTGAAGATAGAGAAAGATAAGCGCAGGGACCCCACCACCTTCCTCCCGGAGGAGGAAATGTCCTATGAAATAAAGAAAAAGAAAAAAAAGAAGAAAAAGAAACAAGTTGACCCTTTCAAGGATATAGAAGAGAAAATGGCGGTGGTGAGAGAACCGGATATCACCGCCTTGGATCCAGACTTTGGGATGGCGATTATTGATCCAGAAGTTACTATCAAGGTGGAGAATATCGAGGTGGATTTGGACTTTAATGATTTCGAATCCAACGACTTCGAAGCACATCACAGTGAAGATGCCCCATTGGAGCCAATAGTCAAGCTTGAGGAGCAAAACCGCGATGCTGTACTTCTGACTTTCGAGACTGTCATTAACGATAAAGTCAAGCACGAGGGGGACGTCAAGCCGAAAATAGAAGGCGGCGAAAGCGAACCGCTCACCCACAACCACTTCTGCAAAGTGTGCCATTTAGTGTTCAAGAACCCTAAAACCCTGCTCATGCATCAGAGAAGGATGCACAAGCATTTCCGGAGGTTTTTTGAGCACATCTGTGACCATTGCGGCATGTCGTACGATGCGAAGAACAGTTTAGTCGCTCACATGCGGAGAAAGCACGGTCCTGAAGCGAATCCAGACGATATGTTAGAGCGCGCTTGTGATATTTGCGCTCTAGTCTTCAAAGGGTTATCTAGACTCCGCATGCACATGCGTAGAAAACACGGTGCATACGAAGAGTCCTTCAAACACGAGTGTGAAGATTGCGGACTGACGTATGATAAGTATGCCAGCTTGATTGTCCACAGACGGAGGAAGCATATGAACGCACCGAAACCTAAAGTTTTGCAATGGTACACATGCCCGTTTTGCTCAAAAGTCTTTTGCAGAAGGGAGACATACTCTCGGCATATTCAAAGGAAGCACCATGTAGACGATGATGATATTAAGAAAGAGAACACAAGTTCAGACGAACTGCTTAAGAATAGTGTAACGAACGCGTCCGGGGAAGTCACCTGCAGCTACTGTCCGTTGGTGTTTTCTTCGGTTATGTACTTAAAGCTGCACATGCGGAGGAAGCACAACGCTTTGAGAAACGATTTTAGATTAAAATGTAAACTTTGTAACTTGTCCTACGACAAAGTTGAGAGTTTGAAACGGCACGTGAGAAGGAAACACGACTCCGGGACGTATTGTGAAGTGTGTAGTAAATCCTTTGCGTCGAAAGAAATGTATTTGAATCATTCACACGCTAAAGTCGTTAAAGAGTGTAATTTATGTGGACTCATTTTCGCCAGTCAAGGAGGTTTAGCGAAGCATTTAAGGTGTACGCACAAAATAGCAGCCGAAAAGACTGTTTTTTGTAATGTATGTAATCTGGGTTTCTATGACAAGCGTCAACTCAAGCCGCACATCATGAAAGTTCACCTGCAGGTGAGCTACACGTGTGAGTTTTGTGGTAAAAAGTTCAAAGCTAAAGAAAGCTACAGACGCCATCTCATATTCAAACATCCAGAGAGCTACATCGACGAGGAGAAAACACACAATTGTGAGAAATGCACAGAGTGTTTTATGAATGAATTTGAGCTGTGCAGGCATATAAACACGGTACACCGTAATGCTACACTCGCACCCGATATAGTGATTAAGAAGGAAGAAAAAGATGTTATCAAAGATTTATTTCACTGCACCAAATGTCCAGATGAATACGGTACTTGGGAGGAATTGAGAGTTCACTTTGAGCAAACACACCATGCTACTGAAGAAACTCAGTGTCAGAAGTGCGGAGAACTAATGCCGAGGGGTGACCTCCAGAAACACATGAAGTTGCATGAAGAGATCGAAATGACCTGCAAATACTGTGAGTTCAAGACTAAGAACCGAATTAGCATGACACAGCATACTCTGAGGCATACGAATGCGGCCACCATGCATTGTGACTTCAACGGTTGTCGATACAAGACTTTCTACGAGGAGGCAATGGCCAAACACAAACGAAAGCATGTCGATTTGGGGGTAAAGCTGCAGTGTGCGAGTTGTCCATTCCAAACCATGAACAAATACCTACTGAAGTACCATGAGGAAGCCCATTCGACTGGTAAAAAAAGATATGCTTGCGATAAGTGTGACTATGCTACCATTTTACCCGCCAATTTGGTCCAACATAAGTATAAGCATGCCACAGAGAAGAGGTTTAAATGCGAAGTATGCCCATTTGCTACGAAATATAACACTTCTCTGCGCTTCCATGTCAGAAAGAAACACTGTGATCTACCCACTTTAAGATAA
- Protein Sequence
- MSKLEAPVKIEKDKRRDPTTFLPEEEMSYEIKKKKKKKKKKQVDPFKDIEEKMAVVREPDITALDPDFGMAIIDPEVTIKVENIEVDLDFNDFESNDFEAHHSEDAPLEPIVKLEEQNRDAVLLTFETVINDKVKHEGDVKPKIEGGESEPLTHNHFCKVCHLVFKNPKTLLMHQRRMHKHFRRFFEHICDHCGMSYDAKNSLVAHMRRKHGPEANPDDMLERACDICALVFKGLSRLRMHMRRKHGAYEESFKHECEDCGLTYDKYASLIVHRRRKHMNAPKPKVLQWYTCPFCSKVFCRRETYSRHIQRKHHVDDDDIKKENTSSDELLKNSVTNASGEVTCSYCPLVFSSVMYLKLHMRRKHNALRNDFRLKCKLCNLSYDKVESLKRHVRRKHDSGTYCEVCSKSFASKEMYLNHSHAKVVKECNLCGLIFASQGGLAKHLRCTHKIAAEKTVFCNVCNLGFYDKRQLKPHIMKVHLQVSYTCEFCGKKFKAKESYRRHLIFKHPESYIDEEKTHNCEKCTECFMNEFELCRHINTVHRNATLAPDIVIKKEEKDVIKDLFHCTKCPDEYGTWEELRVHFEQTHHATEETQCQKCGELMPRGDLQKHMKLHEEIEMTCKYCEFKTKNRISMTQHTLRHTNAATMHCDFNGCRYKTFYEEAMAKHKRKHVDLGVKLQCASCPFQTMNKYLLKYHEEAHSTGKKRYACDKCDYATILPANLVQHKYKHATEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00390656;
- 90% Identity
- -
- 80% Identity
- -