Pchl026014.1
Basic Information
- Insect
- Petrophora chlorosata
- Gene Symbol
- -
- Assembly
- GCA_951640565.1
- Location
- OX621214.1:9392112-9394271[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0022 0.2 13.0 5.5 1 23 110 133 110 133 0.95 2 17 0.00013 0.012 16.9 1.9 1 23 142 165 142 165 0.97 3 17 0.00097 0.087 14.1 0.4 3 23 179 200 178 200 0.97 4 17 0.00078 0.07 14.4 2.0 1 23 209 232 209 232 0.96 5 17 7e-05 0.0063 17.7 3.4 1 23 244 267 244 267 0.98 6 17 1.8e-05 0.0016 19.6 0.6 2 23 299 321 298 321 0.97 7 17 0.0011 0.099 14.0 1.5 2 23 331 353 330 353 0.96 8 17 0.063 5.7 8.4 0.9 2 20 358 376 357 378 0.90 9 17 0.0012 0.11 13.8 0.6 2 21 383 402 382 405 0.94 10 17 0.11 10 7.6 0.8 3 23 415 436 414 436 0.93 11 17 0.00019 0.017 16.4 2.8 1 23 441 464 441 464 0.93 12 17 8.4e-05 0.0076 17.5 0.9 1 23 475 498 475 498 0.96 13 17 0.0092 0.83 11.1 0.6 1 23 518 541 518 541 0.92 14 17 0.023 2.1 9.8 1.9 2 23 574 595 573 595 0.97 15 17 0.2 18 6.8 0.5 2 23 602 625 601 625 0.93 16 17 0.029 2.6 9.5 0.1 1 23 661 683 661 683 0.96 17 17 0.078 7 8.1 1.9 1 23 689 712 689 712 0.97
Sequence Information
- Coding Sequence
- ATGCTCATTATCATACATGTAAAAATTGAGAAATTAATTAGATTCCCCAAAAAATTTGTTAGATTCTGGAAAACAGTAAGAAGATACTGTCTAGATATTCTATTAAAATATCCCCTGTTTCTGTTCCAGTTCATACCCAATGATTTTGACGGCCATGACAGTGAAGACAATCCATCGGAACCCCCAGTGAAGTTTGAAGAACAAAACAGAGATGCCGTCCTCCTTACCTTCGAAAGCGTCATCAATGACAAACTTATGTATGGAGAAGAAATAGAAGTCAAACCCAAAACTGAAGTGGAAGACGAAGAAGAGACAGTTTCTCACAACCACTTCTGCAAAGTGTGCCATTTAGTCTTCAAAAACCCTAGGACGTTACTTATGCACCAGAAAAGGAAACACAAGCGTTTCAGGAGGTATTTTCAACATGTTTGCGACCACTGTGGTATGTCATATGATGCTAAAAACAGTCTAGTTGCTCATATGAGGCGAAAACATGGCCCAGATGCAAATAAAGATGATATGATGGAACAAGCCTGTGATATTTGTGCGCTAGTCTTCAAAGGTTCGTCTAGACTCCGCATGCATATGCGTAGGAAGCATGGGTCTTATGATGACTCTTTCACACATGCTTGCGGTCACTGTGGGCTTACATATGAAAAGTATTCAAGCTTGATAGTGCACGTACGGAGAAAACACAGTAACATCCCCAAACCCAAATCAAATCTACAGTATACATGTCCATTTTGCTCAAAAACTTATCGCCAAAGGGAAACTTACTCTCGTCATATACAAAGAAAGCATCAAGTTGATGATGGAGATACTATCAAGAAAGAAAATACCGCATCAGAGGAGCTGTTGAAGAAAAGTATAACTAATGAAAAGTCTGGAGAAATAACGTGCAGCTACTGCCCCCTAATGTTTTCATCGGCAATGTACTTAAAGTTACATATGAGGAGAAAACATAATGCTTTAACTGATGACTTTAGATTGAAATGTAAACTGTGTAACTTGTCTTATGACAAAGTGGAGAGTTTAAAACGGCATGTAAGACGAAAGCACGATACAGGAACGTATTGTGAGATATGCAGTAGACAGTTTTCATCAAGAgaaatgtatttaagtcattccCATACTAAAGTTATTAAAGAATGTAATTTGTGTGGACTAATTTTCGCGACCCAAGGAGGTCTAGCGAAGCATTTAAGGTGTACGCATAAGGTAGCTACAGAAAAGACTGTATTTTGTAGTGTTTGTAATGAAGGGTTCTTTGATAAACGGCAGCTCAAACCCCATTTTATGAGAGTTCATCTCCAAGTATCGTATACATGTGATTTTTGTGGTAAAAAATTTAAAGCTAAGGAGAGTTACAGGCGTCATCTTATTTTCAAACATCCGGACAATTACGTTGAAGAGCAAAAGACGCATCCGTGTGAAAATTGTCCAGAGAGTTTTATAAATGAGTTTGAACTGTGCAAGCATATAAACATAGTTCACCGAAATACAACAGACATTGTGATTAAGGAAGAAGAGAAAGAGGTCATCAAAGATTTGTTCCAGTGCACAAAATGTACAGATGAGTACACTACTTGGGAGCAATTGAGGGTGCACTTTGAGCAAATCCATCATCAGACAGAAGAAACTCAATGTCAGAAATGTGGAGAGTTAATGCCTAGAGGAGAACTTGTAAAACACATGAAATTACATGAAGAGACCGAAATGTCTTGTCGGTACTGCGAGTTTAGTACTAAGAGCCGAATAAGTATGACCCAGCACATGCTCAGACACACAAATGCAGCAACAATTCGCTGTGACTTCAACGGGTGTGGGTATAAAACGTTCTATGAAGATGCAATGGCCAAGCATAAGAGAAGGCATGTCGATTTGGGTGTTAAATTGCAGTGTGCAAGTTGTCCTTTCCAAACTATGAAcaaatacatactaaaataccaTGAAGAAGCCCATTCTACAGGTAAAAAGCGGTACGCCTGCGATCAGTGTGATTATGCCACTATCCTACCCGCAAATTTGGTCCAACATAAGTACAAACATTCTACGGAAAAGAGATTCAAATGCGAAGTGTGCCCTTTCGCTACGAAGTATAATACTTCTTTGCGTTTCCATGTTAGAAAGAAACACTGCGATCTTCCCACTTTGAGGTAG
- Protein Sequence
- MLIIIHVKIEKLIRFPKKFVRFWKTVRRYCLDILLKYPLFLFQFIPNDFDGHDSEDNPSEPPVKFEEQNRDAVLLTFESVINDKLMYGEEIEVKPKTEVEDEEETVSHNHFCKVCHLVFKNPRTLLMHQKRKHKRFRRYFQHVCDHCGMSYDAKNSLVAHMRRKHGPDANKDDMMEQACDICALVFKGSSRLRMHMRRKHGSYDDSFTHACGHCGLTYEKYSSLIVHVRRKHSNIPKPKSNLQYTCPFCSKTYRQRETYSRHIQRKHQVDDGDTIKKENTASEELLKKSITNEKSGEITCSYCPLMFSSAMYLKLHMRRKHNALTDDFRLKCKLCNLSYDKVESLKRHVRRKHDTGTYCEICSRQFSSREMYLSHSHTKVIKECNLCGLIFATQGGLAKHLRCTHKVATEKTVFCSVCNEGFFDKRQLKPHFMRVHLQVSYTCDFCGKKFKAKESYRRHLIFKHPDNYVEEQKTHPCENCPESFINEFELCKHINIVHRNTTDIVIKEEEKEVIKDLFQCTKCTDEYTTWEQLRVHFEQIHHQTEETQCQKCGELMPRGELVKHMKLHEETEMSCRYCEFSTKSRISMTQHMLRHTNAATIRCDFNGCGYKTFYEDAMAKHKRRHVDLGVKLQCASCPFQTMNKYILKYHEEAHSTGKKRYACDQCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00390656;
- 90% Identity
- -
- 80% Identity
- -