Aaes034113.1
Basic Information
- Insect
- Alsophila aescularia
- Gene Symbol
- -
- Assembly
- GCA_946251895.1
- Location
- CAMIUG010002525.1:24508-27275[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0017 0.17 13.4 5.1 1 23 156 179 156 179 0.95 2 17 0.00025 0.024 16.0 1.9 1 23 188 211 188 211 0.96 3 17 0.0083 0.81 11.2 0.2 3 23 225 246 224 246 0.97 4 17 0.00027 0.026 15.9 0.8 1 23 255 278 255 278 0.97 5 17 1.4e-06 0.00013 23.1 2.0 1 23 290 313 290 313 0.97 6 17 4e-05 0.0039 18.5 0.9 2 23 344 366 343 366 0.97 7 17 0.0012 0.12 13.9 1.5 2 23 376 398 375 398 0.96 8 17 0.1 10 7.8 0.6 2 19 403 420 402 423 0.90 9 17 0.0015 0.15 13.5 1.3 2 21 428 447 427 450 0.94 10 17 0.027 2.6 9.6 0.4 3 23 460 481 459 481 0.96 11 17 0.0012 0.12 13.8 4.5 1 23 486 509 486 509 0.93 12 17 0.033 3.3 9.3 1.9 1 23 520 543 520 543 0.95 13 17 0.0037 0.36 12.3 0.1 1 23 562 585 562 585 0.91 14 17 5.5 5.4e+02 2.3 3.2 2 23 592 612 591 612 0.86 15 17 0.031 3 9.4 2.1 2 23 618 639 617 639 0.97 16 17 0.0063 0.61 11.6 0.2 1 23 705 727 705 727 0.97 17 17 0.085 8.3 8.0 1.9 1 23 733 756 733 756 0.97
Sequence Information
- Coding Sequence
- ATGTCCCTCAAACAAGAAATTCAAGTTAAAATAGAGAAAGACGAGCGCAAAGACCCCACCTCCTTCCTCCCAGAAGAAGAAATGTCCTACGAAATAAAGAAGAAGAAGAAAAAGAAGAAGAAGAAACAAGAAGACCCGTTCAAAGATATAGAAGAGAAAATGACAGTGGTTAAGGAACCGGATGTAACCGCTCTGGATCCGGATATTGGAATGGCGATGGTGGACCCGGAAGTTACAATCAAGGTGGAAAATATCGAAGTCGATTTGGATTTTAATGACTTTCAATCAGTATTCGATCCACATCACAACGACCATAGCCCTCTAGAACCGATAGTAAAACTAGAGGAACAACACCGAGATGCTGTTCTACTGACTTTCGAGAGTGTCATCAACGACAAAGTCACCCACGGAGATGAAGTTAAACCGAAGATAGAAGGCGGAGAGAGTGACCCGGACAGCGACAACCACTTCTGTAAAGTGTGCCATTTAGTCTTCAAAAACCCAAGAACGCTCCTAATGCACCAGAAAAGACAGCACAAGCGTTTCAGAAGATACTTCAAACACATCTGCGACCACTGCGGCATGTCATACGATGCTAAAAACAGCTTGGTCGCTCATATGCGCAGAAAGCATGGCCCAGAGGCAAACAAAGATGACATGTTGGAACGCGCGTGTGATATTTGCGCGCTAGTGTTCAAAGGGATTTCAAGACTCCGCATGCATATGCGTAGAACACATGGCACGTATGAAGAGTCCTTCAAACATGTTTGCGAGGACTGCGGTCTTACTTATGACAAGTATGCTAGCCTTATCGTTCACAGACGAAGGAAACACATCAACATACCTAAACCGAGAGAACCGCAGTGGTTCACGTGTCCGTATTGCTCAAAAGTCTTTACCAGAAGAGAGACTTACGCTCGACATATTCAAAGAAAGCATCAAGTGGATGACGATGATGTGAAGAAAGAAACAGACGGCACCGAAGAGCTGCTCAAGAATAGTATTACTAATGAGAAGTCCGGGGAAATTACCTGCAGCTACTGTCCGTTAATGTTCTCTTCGCTAATGTACTTAAAGTTGCACATGAGGAGGAAGCACAACGCTCTGACGGAGGACTTCAGGCTGAAGTGCAAGCTTTGCAACTTGTCGTACGACAAAGTTGAGAGCTTGAAGCGGCACGTGAGAAGGAAACATGACTCGGGAACCTACTGTGCAGTGTGTAGTAAAACATTCCCTTCAAGGGAAACGTACTTGGATCATTCTCATACTAAAACTGTTAAGGAGTGTCATGTGTGTGGACTTATTTTCGCCAACCAAGGAGGCTTGGCGAAACATTTGAAGTGTACGCACAAGATAACGGCAGCGAAGACTGTTTTCTGCACTATTTGTAACGCAGGTTTCTACGACAAACGCCAGCTGAAGCCGCACTACATGAGGGTACATCTGCAGGTTACGTACACATGTAAATTCTGCAACAAGAAGTTTAAAGCTAAGGAGAGTTACAGACGTCATCTCATTTTCAAACATGCGGACAGTTACGTTGAAGAGAAGAACACGCATAACTGTGAAAAGTGCACGGATAGTTTTATCAATGAATTCGAACTCTCCAAGCATATTAACTTGTTTCACCAAAATACAGATATTGTGATAAAAAAGGAGGAAAAAGATGTTATCAAAGATAAGTTTGTTTGTACGAAATGCACTGCTGAGTATGCCACTTGGGACGAACTGAGGGTTCACTTCGAGCAGTTGCATCTCTCAACGGAAGAAACTCAGTGTCAGAAATGCGGGGAGCTAATGCCTAGAGGCGAGCTACAAAAGCACATGAAACTACATGAGGAGATCGAAATAACCTGCAAATATTGTGAGTTCACGACTAAGAATAGAATAAGTATGACACAGCACACTCTCCGGCACACTCATGCCGCCACCATTCACTGCGACTTCAACGGATGTCGTTACAAGACCTTCTACGAAGTTGCAATGGCCAAACACAAACGAAAGCATGTCGATTTGGGAGTTAAGCTGCAATGTGCCAGCTGTCCGTTCCAGACTATGAACAAATACATATTGAAATACCACGAGGAAGCGCATACGACTGGTAAAAAACGATATGAGTGCGATAAGTGTGATTACGCTACCGTACTACCTGCAAATTTAGTCCAACATAAGTATAAGCATGCAACCGAAAAGAGGTTCAAATGCGAAGTATGCCCTTTCGCTACGAAGTACAATACTTCTTTGCGTTTCCATGTTAGAAAGAAACACTGTGATCTGCCCACTTTAAGATAG
- Protein Sequence
- MSLKQEIQVKIEKDERKDPTSFLPEEEMSYEIKKKKKKKKKKQEDPFKDIEEKMTVVKEPDVTALDPDIGMAMVDPEVTIKVENIEVDLDFNDFQSVFDPHHNDHSPLEPIVKLEEQHRDAVLLTFESVINDKVTHGDEVKPKIEGGESDPDSDNHFCKVCHLVFKNPRTLLMHQKRQHKRFRRYFKHICDHCGMSYDAKNSLVAHMRRKHGPEANKDDMLERACDICALVFKGISRLRMHMRRTHGTYEESFKHVCEDCGLTYDKYASLIVHRRRKHINIPKPREPQWFTCPYCSKVFTRRETYARHIQRKHQVDDDDVKKETDGTEELLKNSITNEKSGEITCSYCPLMFSSLMYLKLHMRRKHNALTEDFRLKCKLCNLSYDKVESLKRHVRRKHDSGTYCAVCSKTFPSRETYLDHSHTKTVKECHVCGLIFANQGGLAKHLKCTHKITAAKTVFCTICNAGFYDKRQLKPHYMRVHLQVTYTCKFCNKKFKAKESYRRHLIFKHADSYVEEKNTHNCEKCTDSFINEFELSKHINLFHQNTDIVIKKEEKDVIKDKFVCTKCTAEYATWDELRVHFEQLHLSTEETQCQKCGELMPRGELQKHMKLHEEIEITCKYCEFTTKNRISMTQHTLRHTHAATIHCDFNGCRYKTFYEVAMAKHKRKHVDLGVKLQCASCPFQTMNKYILKYHEEAHTTGKKRYECDKCDYATVLPANLVQHKYKHATEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00390656;
- 90% Identity
- -
- 80% Identity
- -