Lbim007918.1
Basic Information
- Insect
- Lomographa bimaculata
- Gene Symbol
- -
- Assembly
- GCA_948107665.1
- Location
- OX403610.1:2308876-2314692[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0022 0.15 12.9 5.5 1 23 159 182 159 182 0.95 2 17 0.00023 0.016 16.0 1.9 1 23 191 214 191 214 0.96 3 17 0.0081 0.55 11.2 0.3 3 23 228 249 227 249 0.97 4 17 0.00051 0.035 14.9 0.8 1 23 258 281 258 281 0.96 5 17 1.6e-05 0.0011 19.7 3.1 1 23 293 316 293 316 0.98 6 17 8.9e-05 0.006 17.3 2.2 2 23 348 370 347 370 0.97 7 17 0.0011 0.077 13.9 1.5 2 23 380 402 379 402 0.96 8 17 0.051 3.5 8.7 0.8 2 20 407 425 406 427 0.91 9 17 0.0018 0.12 13.2 0.8 2 21 432 451 431 454 0.94 10 17 0.014 0.96 10.4 0.6 3 23 464 485 463 485 0.96 11 17 8.6e-06 0.00059 20.5 4.1 1 23 490 513 490 513 0.93 12 17 0.0015 0.099 13.5 2.2 1 23 524 547 524 547 0.96 13 17 0.64 44 5.2 0.9 1 23 566 589 566 589 0.90 14 17 0.0018 0.12 13.2 2.0 2 23 622 643 621 643 0.97 15 17 2.2 1.5e+02 3.5 1.8 2 23 650 673 649 673 0.92 16 17 0.0098 0.67 10.9 0.2 1 23 709 731 709 731 0.97 17 17 0.08 5.4 8.0 1.9 1 23 737 760 737 760 0.97
Sequence Information
- Coding Sequence
- ATGTCTTTCGTGCCGGAAGCGTCAATAAAAAAAGAAAAAGACGGACGGAAAGATCCTACCAGTTTCTTACCAGAAGAAGAGATGTCGTATGAAATAAAGAAGAAAAAGAAAAAAAAGAAGAAAAAACAAGTGGATCCATTTAAAGATATAGAAGAGAAACTAGGGGTTGTGAGGGAACCGGATATAACTGCTCTGGATCCAGATATAGGGATGACTATGTGTATGGATCCTGAAGTTACCATAAAGGTGGAGAATATTGAAGTGGACTTGGATTTTAATGATTTTGAATCCAATGACTACGAGCCACATCACGGCGACGATATGCCCCTAGAACCCATAGTGAAACTAGAGGAGCAGAACAGAGGAGCTGTGCTTCTCACCTTCGAGAGTATCATAAATGATAAAGTCAAATTAGAAGATGTTAAGCCAAAAACCGAACCTGGAACAGGTCTGGACAGCGAAGCAGCTCACAACCACTTCTGCAAAGTGTGCCATTTAGTTTTCAAAAACCCTAGAACTCTATTAATGCATCAGAAAAGGAAGCATAAACGGTTTCGACGATACTTCCAACATATATGCGATCACTGTGGGATGTCATACGACGCTAAGAACAGTCTAGTCGCTCATATGAGACGAAAGCATGGACCGGATTCAAATCAAGATGATATGCTAGAAAGGGCCTGTGATATTTGCGCTCTAGTGTTTAAAGGTATATCCAGATTACGCATGCATATGCGGAGAAAGCATGGATCTTATGAAGATACATTCAAACACGCATGCGAAGACTGTGGGTTGACTTATGACAAGTATGCCAGCTTGATTGTTCATAGACGGAGAAAGCACGCTGGTGTTCCTATACCTAGAGTTAATCAATGGTACACATGTCCATTCTGTTCCAAAATGTTCAGCAGAAGAGAAACATACTCCCGCCATATACAGAGAAAGCATCAAGTGGATGAGGAAGACGATGTGCAGAAAGAGAAGACTGAAACAGATGAAGTGTTGAAGAATAGTGTTACTAATGAAAAGACGGGGGAAATCACTTGTAGCCACTGCCCGTTGATGTTCTCATCGTTAATGTACTTAAAGTTGCATATGAGAAGAAAGCACAATGCGCTAACTAATGACTTTAGATTGAAATGCAAGCTGTGTAATCTATCATACGATAAAGTAGAGAGTTTAAAACGCCATGTTAGGAGAAAACATGACTCGGGGACGTACTGTGAAGTGTGTAGCAAACAGTTTGCATCGAAAGAATTGTACTTAAATCATTCACATACAAAAGTTATTAAGGAATGTAATTTGTGTGGACTCATATTCGCAAGCAAAGGTGGTCTTGCGAAGCATTTACGGTGTACGCACAAAATAGCAGCGGATAAGACTGTTTTTTGTAATATATGTAACGAAGGATTCTTTGATAAACGACAGCTCAAACCTCACTACATGAGGGTGCATCTACAAGCTTCCTATACGTGTAAATTCTGCGGGAAATCGTTCAAGTCTAAAGAAAGTTACAGGCGCCATCTCATTTTTAAACATCCTAATACTTATGTCGATGAGTGTAAGACTCATGCATGCGATAAATGTGCAGAGAAGTTTGTGAACGAATTTGAATTGTGCAAGCATATTAACACCGTACATATAGATAACACAGTCATTGTGATAAAGAAGGAAGAGAAGGACATTAAGGAAACGTTTCATTGTACAAAGTGTGATGATGAGTTCCTTACTTGGGAAGAATTGAAAGTCCACTTCGAGCAAATTCATCATACGATGGAAGAAACTCAGTGTCAAAAATGTGGAGAACTCATGCCGAGAGGCGACCTTTTAAAGCATATGAAAGCGCATGAAGAGTCAGATATGACTTGTAGATATTGTGAATTTACTAGTAAAAGCAAAGTTAGTCTGACGCAGCACATGCTGAGACATACAAACGCTGCGACTCTGAAGTGTGACTTCAACGGTTGTAGATACAAAACGTTTTACGAAGATGCAATGATGAAACATAAGAGGAAACACGTTGATATTGGAGTAAAACTTCAATGCGCTAGCTGTCCTTTCCAAACGATGAATAAGTATATTTTGAAATATCATGAGGAAGCGCACTCTACGGGTAAAAAGCGATATTCTTGCGATAAATGTGACTATGCTACAATATTACCAGCGAATTTGGTGCAACATAAGTACAAACATGCGACAGAAAAAAGGTTTAAATGTGAGGTGTGTCCATTTGCTACAAAATATAACACTTCGTTACGTTTTCATGTGAGGAAGAAACATTGTGATCTTCCGACTTTAAGATAG
- Protein Sequence
- MSFVPEASIKKEKDGRKDPTSFLPEEEMSYEIKKKKKKKKKKQVDPFKDIEEKLGVVREPDITALDPDIGMTMCMDPEVTIKVENIEVDLDFNDFESNDYEPHHGDDMPLEPIVKLEEQNRGAVLLTFESIINDKVKLEDVKPKTEPGTGLDSEAAHNHFCKVCHLVFKNPRTLLMHQKRKHKRFRRYFQHICDHCGMSYDAKNSLVAHMRRKHGPDSNQDDMLERACDICALVFKGISRLRMHMRRKHGSYEDTFKHACEDCGLTYDKYASLIVHRRRKHAGVPIPRVNQWYTCPFCSKMFSRRETYSRHIQRKHQVDEEDDVQKEKTETDEVLKNSVTNEKTGEITCSHCPLMFSSLMYLKLHMRRKHNALTNDFRLKCKLCNLSYDKVESLKRHVRRKHDSGTYCEVCSKQFASKELYLNHSHTKVIKECNLCGLIFASKGGLAKHLRCTHKIAADKTVFCNICNEGFFDKRQLKPHYMRVHLQASYTCKFCGKSFKSKESYRRHLIFKHPNTYVDECKTHACDKCAEKFVNEFELCKHINTVHIDNTVIVIKKEEKDIKETFHCTKCDDEFLTWEELKVHFEQIHHTMEETQCQKCGELMPRGDLLKHMKAHEESDMTCRYCEFTSKSKVSLTQHMLRHTNAATLKCDFNGCRYKTFYEDAMMKHKRKHVDIGVKLQCASCPFQTMNKYILKYHEEAHSTGKKRYSCDKCDYATILPANLVQHKYKHATEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00390656;
- 90% Identity
- -
- 80% Identity
- -