Ladu010346.1
Basic Information
- Insect
- Ligdia adustata
- Gene Symbol
- -
- Assembly
- GCA_947049285.1
- Location
- CAMRIN010000274.1:579647-584745[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0022 0.15 12.9 5.5 1 23 153 176 153 176 0.95 2 17 7.4e-05 0.0053 17.5 3.1 1 23 185 208 185 208 0.96 3 17 0.00071 0.051 14.5 0.6 3 23 222 243 221 243 0.97 4 17 0.00048 0.034 15.0 0.7 1 23 252 275 252 275 0.96 5 17 2.8e-05 0.002 18.9 2.9 1 23 286 309 286 309 0.98 6 17 6.5e-05 0.0046 17.7 0.5 2 23 339 361 338 361 0.97 7 17 0.0011 0.077 13.9 1.5 2 23 371 393 370 393 0.96 8 17 0.044 3.1 8.8 1.9 2 19 398 415 397 417 0.94 9 17 0.0016 0.12 13.3 1.0 2 21 423 442 422 445 0.94 10 17 0.068 4.8 8.2 1.5 3 23 455 476 454 476 0.93 11 17 0.0045 0.32 11.9 3.1 1 23 481 504 481 504 0.94 12 17 0.00069 0.049 14.5 1.9 1 23 515 538 515 538 0.97 13 17 0.003 0.22 12.5 0.8 1 23 558 581 558 581 0.92 14 17 0.028 2 9.4 2.1 2 23 614 635 613 635 0.96 15 17 4.8 3.4e+02 2.4 0.8 2 23 642 665 641 665 0.93 16 17 0.014 1 10.3 0.2 1 23 701 723 701 723 0.97 17 17 0.12 8.8 7.4 1.8 1 23 729 752 729 752 0.97
Sequence Information
- Coding Sequence
- ATGTCTCTTATTCCGGAAACGTTATCGAAAAAGGACAGGGATGAGCGCAAGGACCCCACGTCTTTCTTGCCCGAAGAGGAGATGACGTATGAAATCAAAAAGAAGAAGAAGAAGAAAAAGAAGAAGCAGGAAGACCCTTTTAAAGATTTAGAAGAAAAGATGGCTACAGTTAGGGAACCAGATATAACTGCTCTGGACCCGGACATAGGCATGGACCCAGAGGTCACCATCAAGGTGGAGAATATTGAAGTGGACCTAGACTTCAACGATTTTCTACCAAACGACTACGAGCCCCACCACAGCGATGAAACTTTCCCCGAGCCAGAAATAAAACTAGAAGAGCAAAGCCGAGACGCTGTCATACTAACCTTCGAAAGTGTCATAAACGATAAACTACCCGTGGGAGAAACCAAACCAAAAGCAGAAAACATAGAAATGGGTCCCGAAGAACCTTCCCATTTCTGCAAAGTGTGCCATTTAGTGTTCAAAAACCCTAGAACGTTACTAATGCATCAGAAAAGGAAGCACAAACGATTTAGACGCTACTTCGAGCACATATGTGATCACTGTGGCATGTCGTATGACTTTAAAAACAGTCTCATAGCTCATATGAGAAGAAAACACGGACCCGGTGTGAATATAGACGATATGAAGGAAGTCGCTTGCGATATCTGTGCGTTAGTGTTCAAAGGAAAGTCAAGGTTACGGATGCATATGAGAAGAAAGCATGGATCTTATGAGGATTCGTTTAAACACGCTTGTGAAGATTGCGGTCTCACTTATGAGAAATATGCCAGTTTAATCGTACATAGACGTAGGAAACATGTCAACGCTCCGCAGCCTAAAGCTCAGTGGTACACTTGTCCATACTGCTCTAAATTATTTTCTAGGAGAGAAACCTATTCGAGACACATTCAACGTAAACATAGAGTCGATGAAGATGGTGATACTGAAAATCCTGAGACGGAGAAAGTTTTAAAGAATGCAATCAAAAATGAAAAGTCTGGTGAAGTCACTTGCAGTTACTGCCCTCTGGTGTTCTCATCGATAATGTACTTGAAACTTCACATGAGAAGAAAGCATAACGTAATGGCCGATGAGTTCAGATTGAAATGTAAATTGTGTAATTTGTCATACGACAAAGTGGAGAGTTTGAAACGTCATGTCAGAAGAAAACACGAACCTGGCACGTATTGTGAAGTTTGTAGCAAAAATTTCAGCTCAAAGGAGAAATATTTGAATCATTCGCATAATAAAGTTGTTAAGGAGTGCAATTTGTGCGGATTGATATTTGCTACTCAGGGAGGTCTCTCTAAACATTTGAGGTGTACACATAAAGTGCCGATGGATAAAACCGTGTTCTGTCATATATGTAACGCTGGGTTCTACGATAAACGTCAACTGAAACCTCACTTCATGAGGGTCCACTTACAAGTGAGCTACACATGTTTATATTGCAACAAATTATTTAAAGCAAAAGAGAGTTACAGACGACATTTATTGTTCAAACACCCGGACAGATACGTTGAAGAAACTAAAACTCATCAGTGTGAGAAATGTCCAGAGTTATTCATTAACGAATTTGAACTCTGCAAGCATATAAACATGGTTCATATTAGCCCTACAGACGTTGTTATAAAGAAAGAGGAGAAAGATGTTATTAAAGACTTATTCCGTTGTACGAAATGTGAAAACGAATACACTACGTGGGAGGAATTGAGGGTACATTTCGAACAAACTCATCACGGGACAGAAGAAACGCAATGTCAGAAGTGCGGTGAACTGTTACCTCGCAACGAATTACCTAAACACATGAAATCACATGAGGAGACTGAAATGTCTTGTCAGTACTGCGAATACAAGACCAAAAGTAAAGTGAGCATGACGCAACACACTTTAAGACATACCAACGCTGCAACGATCACTTGTGACTTTAATGGTTGTCGATATAAAACTTATTACGAAGAAGCGATGGCAAAACATAAGAAGAAACATGTGGATTTAGGTGTGAAGTTACAATGTGCTAGTTGTCCGTTCCAAACAATGAATAAATATATACTAAAATATCACGAGGAAGCCCATTCGTCGGGTAAGAAGCGATATTCCTGCGATCAGTGTGACTACGCTACTATCTTACCAGCTAATCTAGTGCAACATAAATATAAGCATTCCACGGAGAAAAGGTTCAAATGTGAAGTTTGTCCGTTTGCATCTAAATATAATACATCTTTACGGTTTCATGTTAGGAAAAAACACTGTGATTTACCAACTCTTAGGTAG
- Protein Sequence
- MSLIPETLSKKDRDERKDPTSFLPEEEMTYEIKKKKKKKKKKQEDPFKDLEEKMATVREPDITALDPDIGMDPEVTIKVENIEVDLDFNDFLPNDYEPHHSDETFPEPEIKLEEQSRDAVILTFESVINDKLPVGETKPKAENIEMGPEEPSHFCKVCHLVFKNPRTLLMHQKRKHKRFRRYFEHICDHCGMSYDFKNSLIAHMRRKHGPGVNIDDMKEVACDICALVFKGKSRLRMHMRRKHGSYEDSFKHACEDCGLTYEKYASLIVHRRRKHVNAPQPKAQWYTCPYCSKLFSRRETYSRHIQRKHRVDEDGDTENPETEKVLKNAIKNEKSGEVTCSYCPLVFSSIMYLKLHMRRKHNVMADEFRLKCKLCNLSYDKVESLKRHVRRKHEPGTYCEVCSKNFSSKEKYLNHSHNKVVKECNLCGLIFATQGGLSKHLRCTHKVPMDKTVFCHICNAGFYDKRQLKPHFMRVHLQVSYTCLYCNKLFKAKESYRRHLLFKHPDRYVEETKTHQCEKCPELFINEFELCKHINMVHISPTDVVIKKEEKDVIKDLFRCTKCENEYTTWEELRVHFEQTHHGTEETQCQKCGELLPRNELPKHMKSHEETEMSCQYCEYKTKSKVSMTQHTLRHTNAATITCDFNGCRYKTYYEEAMAKHKKKHVDLGVKLQCASCPFQTMNKYILKYHEEAHSSGKKRYSCDQCDYATILPANLVQHKYKHSTEKRFKCEVCPFASKYNTSLRFHVRKKHCDLPTLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00390656;
- 90% Identity
- -
- 80% Identity
- -