Ahis003407.1
Basic Information
- Insect
- Apocheima hispidaria
- Gene Symbol
- -
- Assembly
- GCA_947579745.1
- Location
- OX388170.1:7768450-7770553[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00084 0.053 14.2 5.1 1 23 65 88 65 88 0.95 2 17 3.1e-06 0.00019 21.9 0.2 1 23 97 120 97 120 0.97 3 17 0.0078 0.49 11.2 0.2 3 23 134 155 133 155 0.97 4 17 0.00078 0.049 14.3 1.0 1 23 164 187 164 187 0.96 5 17 0.00086 0.054 14.2 2.2 1 23 198 221 198 221 0.98 6 17 9.7e-05 0.0061 17.2 0.7 2 23 251 273 250 273 0.97 7 17 0.00031 0.02 15.6 2.1 1 23 282 305 282 305 0.98 8 17 0.19 12 6.8 0.5 2 19 310 327 309 330 0.91 9 17 0.00017 0.011 16.4 0.2 2 23 335 357 334 357 0.95 10 17 0.32 20 6.1 0.5 3 23 367 388 366 388 0.93 11 17 0.0024 0.15 12.8 3.9 1 23 393 416 393 416 0.95 12 17 0.00053 0.033 14.8 1.4 1 23 427 450 427 450 0.97 13 17 0.0056 0.35 11.6 1.4 1 23 470 493 470 494 0.94 14 17 0.0093 0.58 10.9 2.3 2 23 526 547 525 547 0.97 15 17 8.8 5.5e+02 1.6 2.3 3 23 555 577 553 577 0.88 16 17 0.024 1.5 9.6 0.1 1 23 613 635 613 635 0.96 17 17 0.15 9.7 7.1 2.0 1 23 641 664 641 664 0.96
Sequence Information
- Coding Sequence
- ATGAGTTTTCTGGACAACGACTACGAACCGGACCACAGCGAGGGGAACCCCATGGAACCCGAAGTGAAACTCGAGGAGCAAAGCAGAGACGCCGTCCTACTCACCTTCGAAAGCGTCATCAACGACAAACTAATCTACGGAGAAGACGTCAAACCGAAAACAGAAAATGTCAATTCCGATACGACGCATAACCACTTCTGTAAAGTCTGCCATCTTGTCTTCAAAAATCCCAGAACGCTGATAATGCATCAAAAAAGAAGGCACAAACGCTTCAGAAAATATTTTCAATTTATTTGTGACGACTGCGGTATGTCATACGATACTAAGAACAGCTTGATCGCTCATATAAGAAGAAAACATGGCCCAGATGCAAATGTAGACGATATGAAGGAAAGGGCTTGTGATATTTGCGCGCTAGTTTTCAAAGGACTGGCCAGATTGAGGATGCATATGCGTAGGAAACACGGGGCTTATGAAGACTCCTTCAAACATGCATGTGAAGACTGCGGTCTCACATACGAGAAATACGCGAGCTTAATAATGCATAGACGTAGAAAACACTGTAGCGTTCCTAAACAGAAAACTCAGTGGTACACTTGCCCGTTCTGCTCCAAACTTTTCCCGAAGAGAGAGACGTACTCACGTCATATTCAGCGCAAGCACAAAGTTAACGACGATGATGAAGTCGAAAGTCCGGAATCGGAACATGTTTTAAAGAATGCTGTTATGAATGAAAAGTCCGGTGAAGTCACCTGCAGCTATTGCCCCTTGATGTTCTCATCTATAATGTACTTAAAACTCCATATGAGGAGAAAACATAACGTCCTAACCAATGACTTTAGATTCAAGTGTAAGCTTTGCAATCTATCCTATGATAAAGTGGAGAGTTTGAAACGTCATGTCAGGAGAAAGCATGAACCGGGGACGTACTGTGAAGTTTGCAGCAAGCAGTTTCCGTCCTTGGAAGCGTACCTAAATCATTCTCATAAGAAAGTTATTAAGGAGTGTAACTTGTGCGGGCTTATTTTCGCAACCCAAGGGGGTCTTTCGAAGCATTTAAGGTTTACGCATAAAGTCCCAACGGATAACAAAGTGTTTTGTAGCGTTTGTAACGCGGGCTTTCAGGATAAACGTCAGCTTAAACCTCATTTCATGAGGGTACATTTACAAGTGAGCTACTCATGCCAGTTTTGTAGCAAGATGTTCAAAGCAAAAGAGAGTTACAAAAGGCACTTGATGTTTAAACATCCGAATAGCTACGTCGAGGAAAAGAAAACGCATCAATGCGAAAAGTGTCCGGAGTTGTTTATCGACGAATTTGAACTCTGCAAGCATATAAATATGGCTCATCGAGACACCCCAGACGTTATCATAAAGAAAGAGGAGAAAGACGTAATTAAGGACTTGTTTCGGTGTACCAAATGTAATGACGAGTACACTACATGGGAGGAACTAAGGGTACATTTTGAATCTGTGCACCACGCCAATGAAGAAACTCAGTGTCAAAAATGCGGCGAGCTCATGCCTCGCAGCGAATTGCCCAAACATATGAAAACTCATGAAGAGGTCGAAATGTCATGTAAATACTGCGAGTTTAAGACTAAAAGTAGGGTTAGCATGACTCAGCATATGCTGAGACACAAAAACGCAGCGACCCTAAACTGTGACTTTCATGGATGTAGATATAAAACGTTTTACGAAGATGCCATGGCGAAGCATAAAAGACGCCATATTGATTTAGGTGTTAAGTTACAATGTTCCAGTTGCCCGTTCCAAACTATGAACAAGTACATACTAAGATATCACGAGGAAGCCCATACTACAGGGAAAAAACGCTATGCTTGTGATCAATGTGATTATGCCACTATTCTGCCAGCAAATCTGGTGCAACATAAGTATAAACATTCTTCAGTGAAAAGGTTCAAATGTGAAGTGTGTCCATTTGCTACTAAGTACAATACGTCATTGCGTTTTCATGTCAAAAAGAAACATTGTGATCTTCCGACTTTGAGGTAG
- Protein Sequence
- MSFLDNDYEPDHSEGNPMEPEVKLEEQSRDAVLLTFESVINDKLIYGEDVKPKTENVNSDTTHNHFCKVCHLVFKNPRTLIMHQKRRHKRFRKYFQFICDDCGMSYDTKNSLIAHIRRKHGPDANVDDMKERACDICALVFKGLARLRMHMRRKHGAYEDSFKHACEDCGLTYEKYASLIMHRRRKHCSVPKQKTQWYTCPFCSKLFPKRETYSRHIQRKHKVNDDDEVESPESEHVLKNAVMNEKSGEVTCSYCPLMFSSIMYLKLHMRRKHNVLTNDFRFKCKLCNLSYDKVESLKRHVRRKHEPGTYCEVCSKQFPSLEAYLNHSHKKVIKECNLCGLIFATQGGLSKHLRFTHKVPTDNKVFCSVCNAGFQDKRQLKPHFMRVHLQVSYSCQFCSKMFKAKESYKRHLMFKHPNSYVEEKKTHQCEKCPELFIDEFELCKHINMAHRDTPDVIIKKEEKDVIKDLFRCTKCNDEYTTWEELRVHFESVHHANEETQCQKCGELMPRSELPKHMKTHEEVEMSCKYCEFKTKSRVSMTQHMLRHKNAATLNCDFHGCRYKTFYEDAMAKHKRRHIDLGVKLQCSSCPFQTMNKYILRYHEEAHTTGKKRYACDQCDYATILPANLVQHKYKHSSVKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00390656;
- 90% Identity
- iTF_00143295;
- 80% Identity
- -