Cses013503.1
Basic Information
- Insect
- Cotesia sesamiae
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:100-3221[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.6 4.9e+03 -2.2 2.7 6 22 139 155 135 193 0.47 2 11 0.00033 0.99 9.6 0.0 17 47 190 220 182 226 0.79 3 11 0.068 2e+02 2.2 0.1 22 43 229 250 223 255 0.88 4 11 0.82 2.4e+03 -1.3 0.0 18 44 280 306 276 314 0.77 5 11 0.021 64 3.8 0.1 26 44 316 334 309 338 0.90 6 11 0.00012 0.35 11.0 0.2 21 47 339 365 334 372 0.83 7 11 1.6 4.6e+03 -2.2 0.0 24 38 426 440 423 447 0.74 8 11 0.00069 2.1 8.6 0.0 21 43 451 473 445 479 0.88 9 11 2.8 8.3e+03 -3.0 0.1 27 44 485 502 483 507 0.81 10 11 0.0024 7.3 6.8 0.1 26 46 513 533 509 535 0.91 11 11 0.011 33 4.7 0.0 19 43 535 559 533 563 0.86
Sequence Information
- Coding Sequence
- ATGGATGTTGTTAATGACATATCGTTCGAAAAAGTATTTAAAATTGAAAAACATGATCCGGAGGACTCAGAAATTAATAATGTTACGGAGGAACATAATTATTCTGACGAATCGAACAATATGAGTGCTCCAGAAAGTGTTTTTATAAATATTGATCTTCCTGTCAGCATAAAATCAGAGGAACCTGATAATGAAGAAGCTGCGGACCCTCTGGCAGGAGTTACCGAAACGCATTCTGAGGAATTACCGACAGGTTCAGACTTGAAAGGATTATTAGACAGCAATTTCACTAACTGTTCTCTAGATAACAATCAGTATACATTGATTGCTAATGAAAATTTAATTTTAATAAAAAATGAATACGACAGCTCACCTGAGGTAAATAGTAATGTCAAAGAAACTAATGTAAAATCATCAAAGAGGCCAAAAATTACTCAGAAAAAGAAAAGACAGTCTCGTAGTAAAAAGAAAAGAAATTTAAAACCTGCAAAAAAGAAAGCTAAACTTTTGAAATGCGACAGGTGTCCTGCTCTATTTGACTACAATAGTAACCTTGAAAGACATAGGCGAACTCACTCGCCGCAAAAACCGTACACTTGCGACATTTGTGGAACAAAATTTGCTTGGAAACGTAATTTAAAAGGTCATATATTTTTACATTCTGGAGAGCGACCTTTCAAATGGGAAAAGCCATGGCATTGTGAGATTTGCCCAGCACAATTTAGTCAGAAGTTGTACTTGAAAAACCATAAAATTGTTCATGCAGATCAATTACCGTTTGAATGTGAGACTTGTTCCGAAAGATTTGATACGGAAAGCAATCTTTCAGAGCACAAAAAGTCGCATTCGAAAAATTTATGGCAATGTACAATTTGTAATAAAAAATTTACCTGGAAACATCATCTAGAGAAACACCTGCTAACACATACCAGGGCGCGACGTTACAGGTGTCCAACGTGTCCAGCAGCGTTTGGTTCTAACAGTAATCTCACTAGACATATTCGCTCTCATACGGGCGAGAAACCATTTCAATGTGAAATTTGCGAAGCAAGATTTAGTGAAAAACGTAATCTTCAAAATCATATTAATACTCATACAGGAGAAAAGCCGTGGCAGTGTGACAACTGTCCAGCGAAATTTGGATCCAGGTCCACGTTGACCAAGCACAAACAGCTGCATAAGCAACCACTTTTATTTTCGTGTGATCACTGCTCGCAGAAATTTATTTCAAAACGAAAGCTCATCAAACATATATTAACCCATGCGGACAATTGGCCATTTCAATGTGAAATTTGTTCAGCAAGATTCACCGGGAAACGGAGTATGTATTTTCACTCTCTGACTCACACAGGTGAAAAACCGTGGGAGTGTGAAATTTGTTTTGCTAAATTTGCTCAAAAAGCTTATTTAACAAGGCATAAACTTACTCATATAAATTTGCTATCATATAAGTGTCCTCACTGTTCAGAGCGATTTCATTCGGTAGAAAATCTTAATGAACATATACCAATTCACATGGCTCCTAAAATGATTATACAGTGTGATTTATGTTCAGCAACGTTTCGCGAAATACGGAATTTGAACAGTCATATGGTACTTCATTCTCAAGGAGAAGAGCCTTGGAGATGTGAAATTTGTTCAATAAGTTTTAGATGGAAGTTTGATTTAGATAAACATAAACTTGATCATTGTTAG
- Protein Sequence
- MDVVNDISFEKVFKIEKHDPEDSEINNVTEEHNYSDESNNMSAPESVFINIDLPVSIKSEEPDNEEAADPLAGVTETHSEELPTGSDLKGLLDSNFTNCSLDNNQYTLIANENLILIKNEYDSSPEVNSNVKETNVKSSKRPKITQKKKRQSRSKKKRNLKPAKKKAKLLKCDRCPALFDYNSNLERHRRTHSPQKPYTCDICGTKFAWKRNLKGHIFLHSGERPFKWEKPWHCEICPAQFSQKLYLKNHKIVHADQLPFECETCSERFDTESNLSEHKKSHSKNLWQCTICNKKFTWKHHLEKHLLTHTRARRYRCPTCPAAFGSNSNLTRHIRSHTGEKPFQCEICEARFSEKRNLQNHINTHTGEKPWQCDNCPAKFGSRSTLTKHKQLHKQPLLFSCDHCSQKFISKRKLIKHILTHADNWPFQCEICSARFTGKRSMYFHSLTHTGEKPWECEICFAKFAQKAYLTRHKLTHINLLSYKCPHCSERFHSVENLNEHIPIHMAPKMIIQCDLCSATFREIRNLNSHMVLHSQGEEPWRCEICSISFRWKFDLDKHKLDHC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00382057; iTF_00381522; iTF_00381296; iTF_00379310; iTF_00380755; iTF_00380536; iTF_00379066;
- 90% Identity
- iTF_00382057;
- 80% Identity
- iTF_00382057;