Cglo007512.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cotesia glomerata
Gene Symbol
-
Assembly
None
Location
Contig25106:3630-6462[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 4e-05 0.0043 17.8 0.7 2 23 171 192 170 192 0.97
2 20 0.00065 0.07 14.0 0.4 1 23 198 220 198 220 0.96
3 20 2.6e-06 0.00027 21.5 2.4 1 23 226 248 226 248 0.98
4 20 2e-07 2.1e-05 25.0 1.5 1 23 254 276 254 276 0.98
5 20 6e-05 0.0065 17.2 0.5 1 23 282 304 282 304 0.98
6 20 4.1e-05 0.0044 17.7 0.6 2 23 311 332 310 332 0.96
7 20 0.00014 0.015 16.1 0.5 2 23 339 360 338 360 0.96
8 20 0.0007 0.075 13.9 0.3 1 23 366 388 366 388 0.97
9 20 0.00076 0.082 13.8 0.9 2 23 395 416 394 416 0.95
10 20 0.00011 0.012 16.4 1.3 1 23 422 444 422 444 0.98
11 20 0.00012 0.013 16.3 4.9 2 23 450 471 449 471 0.97
12 20 1.3e-07 1.4e-05 25.6 0.2 1 23 477 499 477 499 0.99
13 20 1.3e-06 0.00014 22.4 0.6 1 23 505 527 505 527 0.99
14 20 6.4e-05 0.0069 17.1 0.5 2 23 534 555 533 555 0.96
15 20 3.4e-05 0.0037 18.0 3.6 1 23 561 583 561 583 0.98
16 20 0.34 37 5.4 1.2 1 23 589 611 589 611 0.82
17 20 0.0001 0.011 16.5 0.3 2 23 618 639 617 639 0.97
18 20 0.00038 0.041 14.7 1.2 1 20 645 664 645 667 0.94
19 20 0.0017 0.18 12.7 0.2 2 23 675 696 674 696 0.95
20 20 0.17 18 6.4 0.5 2 23 704 725 703 725 0.93

Sequence Information

Coding Sequence
ATGGATGTTGTTAATGACATTTCGTTTGAAAAAGTATTTAAAATTGAAAAACATGATCCGGAGGACTCAGAAATTAACAATGTTACGGAGGAACATAATTATCCTGATGATACGAATAATATGAGTGCTCCAGAAAGTGTTTTTATAAATATTGATCTTCCTGTCAGCATAAAAGCAGAGGAGCCTGATAATGAAGAAGCTGCGGATCCATTGGCAGAAGTTACCGAAACACAGGCTGAGGAATCATCGACGGGTTCAGACTTGAAAGGATTATTAGACAGCAATTCGACTAACTGTTCTCTAGATAGCAATCAGTATACATTGATTGCTAATGAAAATTTAATTTTAATAAAAAATGAATACGACAGCTCACCTGAGGTAAACAGTGATGTTAAAGAAACGAATGTAAAATCATCAAAGAGGCCAAAAATTACTAACAAAAAGGAAAGACAGTCTCGTAGTAAAAAGAAACGAAGTTCAAAACCTGCGAAAAAGAAAGCTAAACTTTTGAAATGCGACAGGTGTCCTGCTTTATTCGACTACAACAGTAACCTTGAAAGACATAGGCGAACTCACTCACCGAAAAAACCATATACTTGCGACATTTGTGGAACAAAATTTGCTTGGAAACGTAATTTAAAAGGTCATATATTTTTACATTCTGGAGAGCGACCTTTCAAATGTAAGACATGCTTGAAAACATTCAACAATAAAAATACACTGGAAAGACATATGATTATTCACTTAGGTGTTAAACCACACAAATGCAAAATATGTCCAGCAGGATTTGATTCTAAAAGCAATTTAACGAGACACATTCGCTCTCATACAGGTGAAAAACCATTCCAATGTGAAATCTGCTTAGCAAAATTTACAGAGAAGCGCAATTTGCAGAACCATTTACTAATTCATTCAGGAGAGAAACCGTGGCAGTGTAATGCATGTCCGTTAAGATTCAGTCAGAAGGCGTACTTGAGAAAACACCAAATGTACCACATAAGTAAAAACGTTCTAGAGTGCGACGTCTGTTTGATGACATTCGAAACGAAACGCAGTCTATCTAGACATATGACGATTCACGCAACCGACAGGAAGTTTGAATGTGATATGTGTTTAGCAAGATTCATTAAAAAACGTGAACTGACCAATCATATAATGGCTCACACAGGGGAAAAACCATGGCACTGTGAAATTTGCCCAGCAAAATTTAGTCAGAAGTTGTATTTAAAAAATCATAAAATTGTTCATGCAGAACAATTACCGTTTGAGTGTAAGACTTGTTCCGAAAGATTTGATACGGAAGACAATCTTTCAGAGCACAAAAAGTCTCATTCGAAAAATTTATGGCAATGTACAATTTGTAATAAAAAATTTACGTGGAAACATCATCTCGAGAAACACTTACTAACACATACCAGGGCGCGACGTTACAGGTGTCCAACGTGTCCAGCAGCGTTTGGTTCTAATAGTAATCTCACTAGACATATTCGCTCTCATACAGGCGAGAAACCATTCCAATGTGAAATTTGCGAAGCAAGATTTAGTGAGAAACGTAATCTCCAAAATCATATTAATACCCATACAGGAGAAAAGCCGTGGCAGTGTGACAATTGTCCAGCGAAATTTGGATCCAGGTCCACATTGACCAAGCACCAGCAGCTGCATAAGCAACCACTTTTATTTTCGTGTGACCACTGCTCACAGAAATTTGTTTCAAAACGAAAGCTCATCAAACATATACTAACCCATGCGGACAATTGGCCATTTCAATGTGAAATTTGTTCAGCAAGATTCACCGGGAAACGGAGTATGTATTTTCACTCTCTGACTCACACAGGTGAAAAACCATGGGAGTGTGAAATTTGTTTTGCTAAATTTGCTCAAAAAGCTTATTTAACAAGACATAAACTTACTCACATAGATATGCTATCATACAAGTGTCCTCACTGTTCAGAGCGATTTCATTCGGTAGAAAATCTTAATGAACATATACCAATTCACATGGCTCCTAAAACGGTTATACAGTGTGAATTATGTTCAGCAACGTTTCGCGAAATACGGAATTTAAATAATCATATGGTACTTCATTCTCAAGGAGAAGAACCTTGGAGATGTGAAATTTGTTCCACAGGTTTTAGATGGAAGTTTGATTTAGATAAACATAAACTTGACCATTGTCAGTGA
Protein Sequence
MDVVNDISFEKVFKIEKHDPEDSEINNVTEEHNYPDDTNNMSAPESVFINIDLPVSIKAEEPDNEEAADPLAEVTETQAEESSTGSDLKGLLDSNSTNCSLDSNQYTLIANENLILIKNEYDSSPEVNSDVKETNVKSSKRPKITNKKERQSRSKKKRSSKPAKKKAKLLKCDRCPALFDYNSNLERHRRTHSPKKPYTCDICGTKFAWKRNLKGHIFLHSGERPFKCKTCLKTFNNKNTLERHMIIHLGVKPHKCKICPAGFDSKSNLTRHIRSHTGEKPFQCEICLAKFTEKRNLQNHLLIHSGEKPWQCNACPLRFSQKAYLRKHQMYHISKNVLECDVCLMTFETKRSLSRHMTIHATDRKFECDMCLARFIKKRELTNHIMAHTGEKPWHCEICPAKFSQKLYLKNHKIVHAEQLPFECKTCSERFDTEDNLSEHKKSHSKNLWQCTICNKKFTWKHHLEKHLLTHTRARRYRCPTCPAAFGSNSNLTRHIRSHTGEKPFQCEICEARFSEKRNLQNHINTHTGEKPWQCDNCPAKFGSRSTLTKHQQLHKQPLLFSCDHCSQKFVSKRKLIKHILTHADNWPFQCEICSARFTGKRSMYFHSLTHTGEKPWECEICFAKFAQKAYLTRHKLTHIDMLSYKCPHCSERFHSVENLNEHIPIHMAPKTVIQCELCSATFREIRNLNNHMVLHSQGEEPWRCEICSTGFRWKFDLDKHKLDHCQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00382232;
90% Identity
iTF_00379310;
80% Identity
iTF_00380755;