Basic Information

Insect: Cotesia rubecula
Gene Symbol: -
Assembly: None
Location: scaffold:137-3007[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2.4 9.2e+03 -2.8 3.8 6 43 79 128 75 132 0.52

2 13 0.00049 1.9 9.0 0.0 16 47 129 160 123 166 0.81

3 13 0.28 1.1e+03 0.2 0.0 21 44 162 185 159 190 0.88

4 13 0.11 4e+02 1.6 0.0 27 46 191 210 188 213 0.90

5 13 0.51 1.9e+03 -0.6 0.1 26 44 218 236 200 244 0.80

6 13 0.18 6.9e+02 0.8 0.0 21 43 241 263 238 268 0.87

7 13 1.8 6.7e+03 -2.3 0.0 18 43 293 318 290 327 0.70

8 13 0.015 58 4.3 0.1 26 45 329 348 321 355 0.87

9 13 0.00012 0.46 11.0 0.2 21 47 352 378 347 385 0.83

10 13 1.5 5.6e+03 -2.1 0.0 24 39 439 454 436 462 0.75

11 13 0.00061 2.3 8.7 0.0 21 43 464 486 457 492 0.87

12 13 0.0024 9.1 6.8 0.1 26 46 526 546 520 547 0.91

13 13 0.01 39 4.8 0.0 19 43 548 572 545 577 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2.4	9.2e+03	-2.8	3.8	6	43	79	128	75	132	0.52
2	13	0.00049	1.9	9.0	0.0	16	47	129	160	123	166	0.81
3	13	0.28	1.1e+03	0.2	0.0	21	44	162	185	159	190	0.88
4	13	0.11	4e+02	1.6	0.0	27	46	191	210	188	213	0.90
5	13	0.51	1.9e+03	-0.6	0.1	26	44	218	236	200	244	0.80
6	13	0.18	6.9e+02	0.8	0.0	21	43	241	263	238	268	0.87
7	13	1.8	6.7e+03	-2.3	0.0	18	43	293	318	290	327	0.70
8	13	0.015	58	4.3	0.1	26	45	329	348	321	355	0.87
9	13	0.00012	0.46	11.0	0.2	21	47	352	378	347	385	0.83
10	13	1.5	5.6e+03	-2.1	0.0	24	39	439	454	436	462	0.75
11	13	0.00061	2.3	8.7	0.0	21	43	464	486	457	492	0.87
12	13	0.0024	9.1	6.8	0.1	26	46	526	546	520	547	0.91
13	13	0.01	39	4.8	0.0	19	43	548	572	545	577	0.86

Sequence Information

Coding Sequence: GAGCCTGATAATGAAGAAGCTGCGGATCCACTGGCAGGAGTTACCGAAACACAGGCTGAGGAATCATCGACGGGTTCAGACTTGAAAGGATTATTAGACAGCAATCCGACTAACTATTCTCTAGATAGCAATCAGTATACATTGATTGCTAATGAAAATTTAATTTTAATAAAAGATGAATACGACAGCTCACCTGAAGTAATCAGTGATGTCAAAGAAACGAATGTAAAATCATCAAAGAGGCCAAAAGTTACTCAGAAAAAGGAAAGACAGTCTCGTAGTAAAAAGAAACGAAGTTCAAAACCTGCAAAAAAGAAAGCTAAACTTTTGAAATGCGACAGGTGTCCTGCTCTATTTGACTACAATAGTAACCTTGAAAGACATAGGCGAACTCACTCACCGAAAAAACCATACACTTGCGACATTTGTGGAACAAAATTTGCTTGGAAACGTAATTTAAAAGGTCATATATTTTTACATTCTGGAGAGCGACCTTTCAAATGTAAGACATGCTTGAAAACATTTAACAATAAAAATACACTGGAAAGACATATGATTATTCACTTAGAGTGCGACGTCTGTTTGACGACATTCGAAACGAAACGCAGTCTATCTAGACATATGACGATTCACGCAACCGACAGGAAGTTTGAATGTGATATGTGTTTAGCAAGATTCATTAAAAAACGTGAACTTACCAATCATATAATGGCTCACACAGGGGAAAAACCATGGCACTGTGAGGTTTGCCCAGCAAAATTTAGTCAGAAGTTGTATTTAAAAAATCATAAAATTGTTCATGCAGAACAATTACCGTTTGAGTGTAAGACTTGTTCCGAAAGATTTGATACGGAAGACAATCTTTCAGAGCACAAAAAGTCTCATTCGAAAAATTTATGGCAATGTACAATTTGTAATAAAAAATTTACGTGGAAACATCATCTCGAGAAACACATACTAACACATACCAGGGCACGACGTTACAGGTGTCCAACGTGTCCAGCAGCGTTTGGTTCTAATAGTAATCTCACTAGACATATTCGCTCTCATACAGGCGAGAAACCATTCCAATGTGAAATTTGCGAAGCAAGATTTAGTGAGAAACGTAATCTCCAAAATCATATTAATACCCATACAGGAGAAAAGCCGTGGCAGTGTGACAACTGTCCAGCGAAATTTGGATCCAGGTCCACATTGACCAAACACCAGCAACTGCATAAGCAACCACTTTTATTTTCATGTGACCACTGCTCACAGGAATTTGTTTCAAAACGGAAGCTCATCAAACATATACTAACCCATGCGGACAATTGGCCATTTCAATGTGAAATTTGTTCAGCAAGATTCACCGGGAAAAGAAGTATGTATTTTCACTCTCTGAGTCACACAGGTGAAAAACCATGGGAGTGTGAAATTTGTTTTGCTAAATTTGCTCAAAAAGCTTATTTAACAAGACATAAACTTACTCATATAGATATGCTATCATACAAGTGTCCTCACTGTTCAGAGCGATTTCATTCGGTAGAAAATCTTAATGAACATATACCAATTCACATGGCTCCTAAAATGGTTATACAGTGTGAATTATGTTCAGCAACGTTTCGCGAAATACGGAATTTAAACAATCACATGGTACTTCATTCTCAAGGAGAAGAACCTTGGAGATGTGAAATTTGTTCAACAGGTTTTAGATGGAAGTTTGATTTAGATAAACATAAACTTGACCATTCTAAACTCATCGAAAAGTGTATA
Protein Sequence: EPDNEEAADPLAGVTETQAEESSTGSDLKGLLDSNPTNYSLDSNQYTLIANENLILIKDEYDSSPEVISDVKETNVKSSKRPKVTQKKERQSRSKKKRSSKPAKKKAKLLKCDRCPALFDYNSNLERHRRTHSPKKPYTCDICGTKFAWKRNLKGHIFLHSGERPFKCKTCLKTFNNKNTLERHMIIHLECDVCLTTFETKRSLSRHMTIHATDRKFECDMCLARFIKKRELTNHIMAHTGEKPWHCEVCPAKFSQKLYLKNHKIVHAEQLPFECKTCSERFDTEDNLSEHKKSHSKNLWQCTICNKKFTWKHHLEKHILTHTRARRYRCPTCPAAFGSNSNLTRHIRSHTGEKPFQCEICEARFSEKRNLQNHINTHTGEKPWQCDNCPAKFGSRSTLTKHQQLHKQPLLFSCDHCSQEFVSKRKLIKHILTHADNWPFQCEICSARFTGKRSMYFHSLSHTGEKPWECEICFAKFAQKAYLTRHKLTHIDMLSYKCPHCSERFHSVENLNEHIPIHMAPKMVIQCELCSATFREIRNLNNHMVLHSQGEEPWRCEICSTGFRWKFDLDKHKLDHSKLIEKCI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00382232;
90% Identity: iTF_00381296;
80% Identity: iTF_00381296;