Cleu027554.1
Basic Information
- Insect
- Cerastis leucographa
- Gene Symbol
- -
- Assembly
- GCA_963082945.1
- Location
- OY720378.1:2440938-2459601[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0028 0.31 12.8 5.9 1 23 338 360 338 360 0.98 2 11 3.9e-05 0.0045 18.6 1.3 1 23 366 388 366 388 0.98 3 11 0.0001 0.012 17.3 1.7 1 23 394 417 394 417 0.96 4 11 0.049 5.5 8.8 3.2 1 21 423 443 423 445 0.95 5 11 0.00016 0.018 16.7 2.7 1 23 451 473 451 473 0.99 6 11 2.1e-05 0.0024 19.4 5.3 1 23 479 501 479 501 0.98 7 11 0.0048 0.54 12.0 0.9 1 23 509 532 509 532 0.97 8 11 0.026 2.9 9.7 4.3 2 23 539 560 538 560 0.96 9 11 6.8e-05 0.0077 17.8 2.9 1 23 566 588 566 588 0.98 10 11 9.1e-06 0.001 20.6 1.5 1 23 594 617 594 617 0.95 11 11 4.4e-05 0.005 18.4 6.0 1 23 631 653 631 653 0.97
Sequence Information
- Coding Sequence
- ATGAAAGAAACCCCATACTGGCCGGGAGGCCACCCTAACCACATCAAGGTTGAGCGTAAGGAGTACGTGAAGGAGCCAAGCCCGAACAGCGTGGCTGAGTTGCCCCCATCCCCCGCCACCCAGGGGACAGTTTTGCAGAACGAGCAGGTGAGCCAGGGGCACCTGGCAAGCCAAGACAGCGTGGCAGGTCCAGATCGGAAAGAAGAACCAAAATTGAAGTCGTATTATCGTATTACCTCTAAGGGGGAAGTAATCGAGGAAAACCTGGTTTGCCCACCACTGACTCATGACaggaataaaattaagataacaCAAAATATCTTGATAACTCCTAAGCAGGAAgttattgaagaaaaaaacagcCAGGATAACCTGGCTAGCCAAGATTCTGCAGAGGAAGAAAACCCTCAGCAAGATATTGAGGAAACAGAGAGCTTGACAGGAGAAAACTCCACCATGCCACCTCCCATTAAAAAGGAGAAAAACAAGCAAGCGGTCATTCAAACATACTTGAATCAAGGGGCGGTCATCACAGtcAACGCGGCTTCAGATGATAAAACCCTACCTACTGGAATGGTCGAGTATTTCGTAGACGAAGATGGCAAGTACTATTACCAGTCATCGGTTGAAGGGCAGCCCATGGTCATGGATTCTGAAGCCAATCAAGAAAATGAGgaggCTGCTGAAGGTTCGGACCCGATAATGACCGATCAAGGGGAAACCTATCAAACGGTCGCCTTCCTCCCCACGGAGAACAATGGGGAAGTGAGCTATGTCCTCGTAGTGCAAGATGAGAACAAGGGTGGAGTGGTCAACATGGAGCTCAAGGTGGACGAGGGACGGGAGAATGTCAAGACCGAGGCTGAGGAGAAAGGCAACGATGACGTGTATAACTTTGACGATGAGGAGGCCGGTGAAGACGAGGCTGAGGAAGTAGGGGAGACGGAGATGGCGGACCCAACTAAACCCAAGTCTATGAAACAGACGCGCACCAAGCACGTGCGCCCGCACTTCACCTGCAACTTCTGCAACTATACTAGTCATCGCCGTTACCTCCTCCTCCGCCACATGAAGTCCCATTCGGAGGACAGGCCGCACAAGTGCAGCGTGTGCGAGCGCGGCTTCAAGACGCTGGCCTCGCTCCAGAACCACGTGAACATGCACAACGGCGTCAAGCCGCACGTCTGCAAGTACTGCAACAGCCCCTTTACCACCTCGGGCGAGCTGGTGCGTCACGTGCGCTACAAGCACACGCACGAGAAGCCGCACAAGTGCTCGGAATGCGACTACGCGTCTGTCGAGCTATCCAAGCTGCGCCGCCACGTGCGCTGCCACACCGGCGAGAGGCCCTACCAGTGCCCTCACTGCACGTACGCGTCTCCGGACACGTTCAAGCTGAAGCGTCACCTGCGCACGCACACTGGCGAGAAGCCCTATAAGTGCGAACACTGCAACATGTGCTTCACGCAGTCCAACTCGCTGAAGGCCCACCGGCTCATTCACAACGTATCCGAGAAGCCGGTGTACTCATGCGAGCTGTGCCCGGCCAAGTGCGGCCGCAAGACGGACCTGCGCATCCACGTGCAGAAGCTGCATACATCCGACAAGCCGCTCAAGTGTCGCCGCTGTGGCAAGTCCTTCCCCGACCGCTACTCCTGCAAGGTGCACAATAAGACCCACGAGGGCGAGAAATGCTTCAAGTGCGACTTGTGCCCGTACGCGTCCACCACGCAGCGCCATCTCAAGACGCACATGCTCAAGCACACGGACGAGAAGCCCTTCATCTGCGACCTGTGCGACCAGTCCTTCAGGCAGAAGCAGTTGCTCCGTCGCCACCAGAACCTTTACCACAATCCCAACTACGTGCCGAAGCCGCCCAAGGAGAAGACGCACTCGTGCCACGAGTGCCACCGCATGTTCGCGCACAAGGGTAATCTCATCCGGCACCTGGCTGTGCATGACCCCGAATCCGGACATCACGAGCGCGCGCTCGCCCTCAAGATTGGACGCCAGAGGAAGGTCCGGTTCGTCGATGGAGAACCTATGAGGGATATTCGCGTCCTGGATCCAAATGACACCGAGAGCATGATGAAGCTCGGTCTCACTAACAACGGGCTGAAGCACGGCGAGCTCGTGACCGTGGCCGACGACGACGGCCACCAGTATGTGGTGCTCGAGGTCATCCAACTCGAGGACGGCACCGAGCAGCAGGTGGCTGTTGTGGCACCCGATTTCATGGACGAGGATGAGCCCGAAGAGGAAGAGGAGGAagaggaagaggaagaagaagaggaagacgAGGAGGATGAAGTGGGGAAAGATAGGAGCTTTGTTGTGAAGCCAGGCACTTGCACCACACAAAGTATCAAACTTGAGAAAGAGGTCGACTCATGCTTTGGATTTGACGTGGATgacgaagaagaagatgaaAACGAAGAAATTGATGTCGACTATACGGACAAAGTCGTGTTACGTTTAGTTTAG
- Protein Sequence
- MKETPYWPGGHPNHIKVERKEYVKEPSPNSVAELPPSPATQGTVLQNEQVSQGHLASQDSVAGPDRKEEPKLKSYYRITSKGEVIEENLVCPPLTHDRNKIKITQNILITPKQEVIEEKNSQDNLASQDSAEEENPQQDIEETESLTGENSTMPPPIKKEKNKQAVIQTYLNQGAVITVNAASDDKTLPTGMVEYFVDEDGKYYYQSSVEGQPMVMDSEANQENEEAAEGSDPIMTDQGETYQTVAFLPTENNGEVSYVLVVQDENKGGVVNMELKVDEGRENVKTEAEEKGNDDVYNFDDEEAGEDEAEEVGETEMADPTKPKSMKQTRTKHVRPHFTCNFCNYTSHRRYLLLRHMKSHSEDRPHKCSVCERGFKTLASLQNHVNMHNGVKPHVCKYCNSPFTTSGELVRHVRYKHTHEKPHKCSECDYASVELSKLRRHVRCHTGERPYQCPHCTYASPDTFKLKRHLRTHTGEKPYKCEHCNMCFTQSNSLKAHRLIHNVSEKPVYSCELCPAKCGRKTDLRIHVQKLHTSDKPLKCRRCGKSFPDRYSCKVHNKTHEGEKCFKCDLCPYASTTQRHLKTHMLKHTDEKPFICDLCDQSFRQKQLLRRHQNLYHNPNYVPKPPKEKTHSCHECHRMFAHKGNLIRHLAVHDPESGHHERALALKIGRQRKVRFVDGEPMRDIRVLDPNDTESMMKLGLTNNGLKHGELVTVADDDGHQYVVLEVIQLEDGTEQQVAVVAPDFMDEDEPEEEEEEEEEEEEEEDEEDEVGKDRSFVVKPGTCTTQSIKLEKEVDSCFGFDVDDEEEDENEEIDVDYTDKVVLRLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00302416; iTF_01064002; iTF_01062117; iTF_00040140; iTF_00041134; iTF_01063093; iTF_01535189; iTF_01064918; iTF_00685719; iTF_01532379; iTF_01533305; iTF_01084508; iTF_01085674;
- 90% Identity
- iTF_01062117;
- 80% Identity
- -