Nfim001484.1
Basic Information
- Insect
- Noctua fimbriata
- Gene Symbol
- CTCF
- Assembly
- GCA_905163415.1
- Location
- LR990921.1:2486383-2507905[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.003 0.27 12.7 5.9 1 23 385 407 385 407 0.98 2 11 2.9e-05 0.0026 19.0 1.3 1 23 413 435 413 435 0.98 3 11 0.00011 0.01 17.2 1.7 1 23 441 464 441 464 0.96 4 11 0.053 4.9 8.8 3.2 1 21 470 490 470 492 0.95 5 11 0.00017 0.015 16.6 2.7 1 23 498 520 498 520 0.99 6 11 2.3e-05 0.0021 19.3 5.3 1 23 526 548 526 548 0.98 7 11 0.0052 0.47 11.9 0.9 1 23 556 579 556 579 0.97 8 11 0.028 2.6 9.6 4.3 2 23 586 607 585 607 0.96 9 11 7.5e-05 0.0068 17.7 2.9 1 23 613 635 613 635 0.98 10 11 7e-06 0.00063 21.0 1.7 1 23 641 664 641 664 0.95 11 11 4.8e-05 0.0044 18.3 6.0 1 23 678 700 678 700 0.97
Sequence Information
- Coding Sequence
- ATGGTTTTTAGAAGGCCATTGGGGCTGCCCAGTACACGACGCATCAAAGAGGCTACCGTCTTGCGCACTATTGCTCTAAAGCAGTCGGTGTTGGCCTCCGCATCCATCCCCGATGTAGTGCAGTATCGCGGCAACCCCATCAGCATCCGGATCCGTAGGGAATTGAAAACCTTCTGCGTAGAGCGGACCCACAGGCTGCTGTGTACAGTGTCTGGCAACTGGCCACGAGGCCACCCCAACCGCATCAAGCTTAAACTGCTGCAGAGTCCGAAAACCAAGGAGTCAACCCCATCCCCTACCACCCAAGGGAAAGTTTTGCAGAACGAGCAGTGTAGCCAGGCGTACCTGGCACACCAAGGCAGTGTGGCAGGTGCAGACCAGACAAAAGAAGTCAAGTTGCAGAAGGTTTACGTCATTACCCCTGACGGGAAAGTAGTTGAGGAAGACCTGGCTTGCCCACCGCCAACCAATGACAGGAATAAAATACAGATAACACAAAATATCTTGATAGCTCCTAAGAAGGAAgttattaaagaaaagaaattcaGCCAGGATAACCTGGTTAGACAAGATTGCACGAAGGAAAATCAACCTCAGCAAGATATTAAGCCAGGCTTGACAGAAGAAAAATCCACCATGCCACCTCCAATTaaaaaggagaaaaacaagCAAGCTCTCATTCAAACGTACTTGAACCAAGGAGCAGTCATCACAGATGATAAAAGCTTGCCTACTGGAATGGTCGAGTATTTCGTAGATGAAGATGGCAAGTACTACTACCAGTCATCAGTTGGAGGGCAGACCCTGGTCATGAATACTTCGGAAGCCAACCAAGAAAATGAGGAGCCTACTGAAGCTCCGGACCCGATTATGACCGACCAAGGGGAAACGTACCAGACGGTCGCCTTCCTCCCCACGGAGAACAATGGGGAAGTGAGCTATGTTCTTGTAGTACAAGAAGAGAACAAGGGTGGTGTCGTCAACATGGAACTCAAGACCGAGGCTGAGGAGAAAGCCAACGATGATGTGTACAACTTTGACGATGAGGAGGCCGGCGAAGACGAGGAAGAGGAAGAAGGGGACGCGGAAATGGCGGACGGCACTAAACCCAAGCCTTCGAACAAGGCGCGCTCCAAGCACGTGCGCCCACACTTCACCTGCAATTTCTGCAATTATACTAGTCATCGCCGATACCTCCTCCTACGACACATGAAGTCCCACTCGGAGGACAGGCCGCACAAGTGCAACGTGTGCGAGCGCGGTTTCAAGACGCTGGCTTCGCTTCAGAACCACGTGAACATGCACAACGGCGTCAAGCCGCATGTCTGCAAGTACTGCAATAGCCCTTTTACTACCTCGGGCGAGCTGGTACGTCACGTTCGCTACAAGCACACGCACGAGAAGCCGCACAAGTGCTCGGAGTGCGATTACGCGTCCGTGGAGCTGTCCAAGCTGCGCCGCCACGTGCGCTGCCACACCGGCGAGAGGCCCTACCAGTGCCCGCACTGCACGTACGCGTCGCCGGATACGTTCAAGctgaagcgccacctgcgcacGCACACCGGCGAGAAGCCCTATAAGTGCGAGCACTGCAACATGTGCTTCACGCAGTCCAACTCGCTGAAAGCCCACCGGCTTATTCACAATGTATCCGAGAAGCCGGTATACTCATGCGAGCTGTGCCCGGCCAAGTGCGGCCGCAAGACGGACCTGCGCATCCACGTGCAGAAGCTGCACACGTCCGACAAGCCGCTGAAGTGCCGCCGCTGTGGCAAGTCCTTCCCCGACCGCTACTCCTGCAAGGTGCACAATAAGACCCACGAGGGCGAGAAATGCTTCAAGTGCGACCTGTGCCCGTACGCGTCGACCACGCAGCGCCACCTCAAGACGCACATGCTCAAGCACACGGACGAGAAGCCGTTCATCTGCGACATGTGCGACCAGTCCTTCAGGCAAAAGCAGTTGCTTCGTCGCCATCAGAACCTGTACCACAATCCCAACTACGTGCCGAAGCCGCCAAAGGAGAAGACACACTCCTGCCACGAGTGCCACCGCATGTTCGCGCACAAGGGCAACCTCATCCGGCACCTGGCCGTGCACGACCCCGAGTCCGGCCATCACGAGCGCGCGCTCGCTCTCAAGATTGGACGCCAGAGGAAGGTTCGGTTCGTCGATGGAGAACCTATGAGGGATATCCGCGTCCTGGACCCATCAGACACCGAGAGCATGATGAAGCTCGGTCTCACCAACAACGGGTTGAAACACGGAGAGCTCGTGACCGTGGCCGACGATGACGGCCACCAGTATGTGGTGCTCGAGGTCATTCAACTCGAAGATGGCACCGAGCAGCAGGTCGCCGTCGTGGCACCCGAGTTCATGGATGAGGATGAGCCTGAAGAGGAAGAGGAAGAGGAGGAAGAGGACGAAGAAGATGAAGAAGACGAGGAAGAAGAGGGAAAGGACAGAAGCTTTGTGGTAAAGGAAAGCACTGTCACCACCACGAGCATTAAACTTGAGAAGGAGGTTGATACATGCTTTGGATTTGATGAGgaagacgaagaagaagaagaaaacgatGAAATTGATGTCGATGTTAACTATACAGACAAAGTGGTTTTGCATTTAGTTTAG
- Protein Sequence
- MVFRRPLGLPSTRRIKEATVLRTIALKQSVLASASIPDVVQYRGNPISIRIRRELKTFCVERTHRLLCTVSGNWPRGHPNRIKLKLLQSPKTKESTPSPTTQGKVLQNEQCSQAYLAHQGSVAGADQTKEVKLQKVYVITPDGKVVEEDLACPPPTNDRNKIQITQNILIAPKKEVIKEKKFSQDNLVRQDCTKENQPQQDIKPGLTEEKSTMPPPIKKEKNKQALIQTYLNQGAVITDDKSLPTGMVEYFVDEDGKYYYQSSVGGQTLVMNTSEANQENEEPTEAPDPIMTDQGETYQTVAFLPTENNGEVSYVLVVQEENKGGVVNMELKTEAEEKANDDVYNFDDEEAGEDEEEEEGDAEMADGTKPKPSNKARSKHVRPHFTCNFCNYTSHRRYLLLRHMKSHSEDRPHKCNVCERGFKTLASLQNHVNMHNGVKPHVCKYCNSPFTTSGELVRHVRYKHTHEKPHKCSECDYASVELSKLRRHVRCHTGERPYQCPHCTYASPDTFKLKRHLRTHTGEKPYKCEHCNMCFTQSNSLKAHRLIHNVSEKPVYSCELCPAKCGRKTDLRIHVQKLHTSDKPLKCRRCGKSFPDRYSCKVHNKTHEGEKCFKCDLCPYASTTQRHLKTHMLKHTDEKPFICDMCDQSFRQKQLLRRHQNLYHNPNYVPKPPKEKTHSCHECHRMFAHKGNLIRHLAVHDPESGHHERALALKIGRQRKVRFVDGEPMRDIRVLDPSDTESMMKLGLTNNGLKHGELVTVADDDGHQYVVLEVIQLEDGTEQQVAVVAPEFMDEDEPEEEEEEEEEDEEDEEDEEEEGKDRSFVVKESTVTTTSIKLEKEVDTCFGFDEEDEEEEENDEIDVDVNYTDKVVLHLV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00301464;
- 90% Identity
- -
- 80% Identity
- -