Xxan001623.1
Basic Information
- Insect
- Xestia xanthographa
- Gene Symbol
- -
- Assembly
- GCA_905147715.1
- Location
- LR990641.1:3815968-3837259[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0028 0.57 12.7 5.9 1 23 358 380 358 380 0.98 2 11 4.1e-05 0.0081 18.5 1.3 1 23 386 408 386 408 0.98 3 11 0.00011 0.021 17.2 1.7 1 23 414 437 414 437 0.96 4 11 0.05 10 8.8 3.2 1 21 443 463 443 465 0.95 5 11 0.00016 0.032 16.7 2.7 1 23 471 493 471 493 0.99 6 11 2.2e-05 0.0043 19.4 5.3 1 23 499 521 499 521 0.98 7 11 0.0049 0.98 12.0 0.9 1 23 529 552 529 552 0.97 8 11 0.027 5.3 9.7 4.3 2 23 559 580 558 580 0.96 9 11 7e-05 0.014 17.8 2.9 1 23 586 608 586 608 0.98 10 11 6.6e-06 0.0013 21.0 1.7 1 23 614 637 614 637 0.95 11 11 4.6e-05 0.0091 18.4 6.0 1 23 651 673 651 673 0.97
Sequence Information
- Coding Sequence
- ATGGCCATGGAACTCAACAATAAGATGCAATTTTATATTTTGCTTGTTTTAGACTGGCCGGGAGGCCACCCCAAACGCATCAAGCTTGAACGTCAGCAGCTGCAGGCGTACAAAGAGCTGCCGAGTCCGAAAAGCGAAGACGAGTCGCCCCCATTCCCCACCACCCAGGTGGAACTTTTGCCGAACAAACAGGCGAGCCAGGCGTACCTGGCAAGCCAAGACAGCGTGGCAGGTTCGGAcaacaaaaaagaaatcaaattgaaGAAAGTTTTTGTTATTACCCCTAAGGGGGAAATAAAAGAGGAGATTGTTGAGGAAGACCTGGTGTACCCACCACCAACCCATGACAGGAAAAAAATTCAGATAACACAAAATATCTTGATACCTCCTGAGAAGGTGGTTATTGAAAAAAAGAAAGTCAGCCAGGATTACCTGGCTAGCCAAAATTGCGCGAAGGCAGATCAACTTCAGCAAGATATTAAGCCAGGCTTGACAGAAGACAAATCCACCATGCCACCTCCAATTAAAAAGGAGAAAAAGCAAGCGCTTATTCAAACATACTTGAACCAAGGAGGAGCAGTTATCACAGtTAACGCGGCTTCAGACGATAAAAGTTTGCCTCCTGGATTGGTCGAGTATTTCGTAGATGAAGATGGCAAGTACTACTACCAGTCATCGGTCGGAGGGCAGACCCTGGTCATGAATACGGAAGCCAACCAAGAAAATGAGGAGGCTACTGAAGTTCCGGACCCGATTATGACCACAGACCAAGGGGAAACGTACCAGACGGTCGCCTTCCTCCCCACGGAGAACAACGGGGAAGTGAGCTACGTTCTTGTAGTGCAGGAAGAGAACAAGGGTGGTGTCGTCAACATGGAACTCAAGGTGGACGAGGGACGGGAGAATGTTAAGACCGAGGCTGAGGAGAAAGCTAACGATGACGTGTACAACTTTGACGATGAGGAGGCCGGCGAAGACGAGGAAGAGGAAGAAGGGGACGCTGAAATGGCGGACGGCACTAAACCCAAGGTTGCGAACAAGGCGCGCAACAACAAGCACGTGCGCCCACACTTCACCTGTAACTTCTGCAATTATACTAGTCATCGCCGATACCTCCTCCTACGACACATGAAGTCCCACTCGGAGGACAGGCCGCACAAGTGCAGCGTGTGCGAGCGCGGCTTCAAGACGCTGGCCTCGCTTCAGAACCACGTGAACATGCACAATGGCGTCAAGCCGCATGTCTGCAAGTACTGCAACAGCCCCTTCACTACGTCGGGCGAGCTGGTGCGCCACGTGCGTTACAAGCACACGCACGAGAAGCCGCACAAGTGCTCGGAGTGCGACTACGCGTCCGTGGAGCTGTCCAAGCTGCGCCGCCACGTGCGCTGCCACACCGGCGAGAGGCCCTACCAGTGCCCGCACTGCACGTACGCGTCGCCGGACACGTTCAAGCTGAAGCGCCACCTGCGCACGCATACCGGCGAGAAGCCCTACAAGTGCGAGCACTGCAACATGTGCTTCACGCAATCCAACTCGCTGAAAGCCCACCGGCTCATTCACAATGTATCCGAGAAGCCGGTATACTCATGCGAGCTGTGCCCGGCCAAGTGCGGCCGCAAGACGGACCTGCGCATCCACGTGCAGAAGCTGCACACGTCCGACAAGCCGCTGAAGTGTCGCCGCTGTGGCAAGTCCTTCCCCGACCGCTACTCCTGCAAAGTGCACAATAAGACCCACGAGGGCGAGAAATGCTTCAAGTGCGACTTGTGCCCTTACGCGTCGACCACGCAGCGCCACCTCAAGACGCACATGCTCAAGCACACGGACGAGAAGCCGTTCATCTGCGACATGTGCGACCAGTCCTTCAGGCAAAAGCAGTTGCTCCGTCGCCATCAGAACCTGTACCACAATCCCAACTACGTGCCGAAGCCGCCCAAGGAGAAGACGCACTCCTGCCACGAGTGCCACCGCATGTTCGCGCACAAGGGCAACCTCATCCGACACCTGGCCGTGCACGATCCCGAGTCCGGCCATCACGAGCGTGCGCTCGCCCTGAAGATTGGGCGCCAGAGGAAGGTTCGGTTCATCGATGGAGAACCTATGAGGGATATCCGCGTCCTGGACCCAAATGACACCGAGAGCATGATGAAGCTCGGTCTATCCAACAACGGGTTGAAGCACGGCGAGCTCGTGACCGTGGCCGACGACGACGGCCACCAGTATGTGGTGCTCGAGGTCATCCAGCTCGAGGACGGCACCGAGCAGCAGGTGGCCGTCGTGGCGCCCGAGTTCATTGATGAGGAAGAGCCTGaagaagaagaggaagaggaagaagaGGATGAAGAATTAGAGGATGAGGAGGAAGAATTGGGGAAAGATAGGAGCTTTGTTGTAAAGGACAGCACCGTCACCACCACCAGCATCAAACTTGAGAAGGAGGTCGACACGTGCTTTGGATTTGATGATgaagaggaagaggaagaagaaaACGACGATATTGATGTAGATGTTAACTATACAGATAAAGTCGTCTTGCATTTAGTTTAG
- Protein Sequence
- MAMELNNKMQFYILLVLDWPGGHPKRIKLERQQLQAYKELPSPKSEDESPPFPTTQVELLPNKQASQAYLASQDSVAGSDNKKEIKLKKVFVITPKGEIKEEIVEEDLVYPPPTHDRKKIQITQNILIPPEKVVIEKKKVSQDYLASQNCAKADQLQQDIKPGLTEDKSTMPPPIKKEKKQALIQTYLNQGGAVITVNAASDDKSLPPGLVEYFVDEDGKYYYQSSVGGQTLVMNTEANQENEEATEVPDPIMTTDQGETYQTVAFLPTENNGEVSYVLVVQEENKGGVVNMELKVDEGRENVKTEAEEKANDDVYNFDDEEAGEDEEEEEGDAEMADGTKPKVANKARNNKHVRPHFTCNFCNYTSHRRYLLLRHMKSHSEDRPHKCSVCERGFKTLASLQNHVNMHNGVKPHVCKYCNSPFTTSGELVRHVRYKHTHEKPHKCSECDYASVELSKLRRHVRCHTGERPYQCPHCTYASPDTFKLKRHLRTHTGEKPYKCEHCNMCFTQSNSLKAHRLIHNVSEKPVYSCELCPAKCGRKTDLRIHVQKLHTSDKPLKCRRCGKSFPDRYSCKVHNKTHEGEKCFKCDLCPYASTTQRHLKTHMLKHTDEKPFICDMCDQSFRQKQLLRRHQNLYHNPNYVPKPPKEKTHSCHECHRMFAHKGNLIRHLAVHDPESGHHERALALKIGRQRKVRFIDGEPMRDIRVLDPNDTESMMKLGLSNNGLKHGELVTVADDDGHQYVVLEVIQLEDGTEQQVAVVAPEFIDEEEPEEEEEEEEEDEELEDEEEELGKDRSFVVKDSTVTTTSIKLEKEVDTCFGFDDEEEEEEENDDIDVDVNYTDKVVLHLV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00301464;
- 90% Identity
- -
- 80% Identity
- -