Cnig004915.1
Basic Information
- Insect
- Cephus nigrinus
- Gene Symbol
- KBTBD4
- Assembly
- GCA_030142395.1
- Location
- JARQSZ010000410.1:1595461-1597684[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 7.4 1e+04 -3.5 0.3 31 40 181 191 181 191 0.88 2 5 3.7e-06 0.0053 16.7 0.0 2 38 200 236 199 242 0.86 3 5 5.8e-12 8.1e-09 35.3 0.1 5 39 253 286 250 293 0.85 4 5 0.092 1.3e+02 2.6 0.0 21 34 320 333 306 338 0.80 5 5 2.7e-11 3.7e-08 33.2 0.0 3 39 363 399 348 405 0.94
Sequence Information
- Coding Sequence
- ATGTCTGAAGTTGCCAGTCAACCTCAAATTGACCAAAGttactgtttcaaatgggGCGATTATCAGAATCACTTATCAGGCGTTGTTCGCCAGCTGCTGGAGGAGGATTGTATGGTGGACGTAACTCTCTCTGCAGCAGGAGAACGTATTCATGCTCATCGGATTGTCCTGTGCGCTTGTAGCACATTATTTCAAgaaGTCCTTAGTCAGGTCAATGAAGATCATCCGACAATTATATTAAGTGATATATCTCCTCAAGATGTGAGATCTATTGTAGAATTTACGTACCATGGCGAAGTACGTATACCTGTAGAGAATATTAGCAATTTATTGGATGCAGCACATTCGCTAAAGATTTGTGGCCTTATGGagATTGATGGtttggatgaaaatgatgCATCCACCAGTACAAAAGACTTTGGTGATGATAGTATAGAGCCATCAACTGAACTGAATGAAACGGAAGATAAAGTACTAAGTGCTTTGGAAAGTGAATATGATAGTATTACTGATAGTACCGAACAGAACGTACCTGGAGTTTCTACTATAaacaaaaagaggaagagaagacGTGATATaataaagagagaatataGTGAAGATATGCTTGTATCAGCTATCAATGATCTACGTTCTGGACAGACGCTCATAGAAGCTTctaccaaaaataatatccccCGTTCTACTCTGTATATGCGCGCTAAAGCATTAGGAATACATTTAAATGCTACGAGAAATGAATATCCTGCAGAATGTATGAAAGCTGCTATAAATGCTGTTATTGgaGGTTCAAGTTTGCAACACGCAGCAGAGATGTATAGTATTCCCAAAACTGTTCTATGGAGACGTATACAAAAGGAAGGATATCAAATTTTGCGTTCTGAAATGAAAAGATCATATGGCTCTGATAAAAGAGAAGCTGCAGTCAAAGCTCTGGAAAGGGGAGAAAATCTGACTAAAGTGGCACTTGAATTTCAGattccAAAAACAACATTGTTTAGAGACAAGGCCAGATTGGTAGATGAAGGTAAATTACCACTATCATTCTGGAAAAAGcgtaaaacagaaaatgaGGAATTGAAAAAGACACGCCTAGAAGAAGCAGTAGCTGCCTGTAAGGGAGGTAGAATGTCACAGGCAGCAGCATCAATGACTTATCATATCCCAAAAACAACTATATGGCGACGTCTACAACAAGATGGAAAAAAACATAATCGAGCATCAAATAGTAAACGACAGCAGAGATTGACAAACACAAATGAAGAAACACAGGAGAAGCCACAGGAAGGATCAGAATATGCTTTTTGCGAgGTATCTTCGGAAATTCCAATAGCATACATAGATGAGAGTAGCATCCCTGAAAACTCTGTTATCATTTTGACTACTGATGACGTGCAAGCGATTAACTTGGAGGAGGGTAGACAAATTATCGTTAGCTCGgGATCTGGTCAAGAGTATGTTCCTTGTACTTTAAGTATAGAAGATAATGCAAATTACATGCCAGCTGAGAGTTAG
- Protein Sequence
- MSEVASQPQIDQSYCFKWGDYQNHLSGVVRQLLEEDCMVDVTLSAAGERIHAHRIVLCACSTLFQEVLSQVNEDHPTIILSDISPQDVRSIVEFTYHGEVRIPVENISNLLDAAHSLKICGLMEIDGLDENDASTSTKDFGDDSIEPSTELNETEDKVLSALESEYDSITDSTEQNVPGVSTINKKRKRRRDIIKREYSEDMLVSAINDLRSGQTLIEASTKNNIPRSTLYMRAKALGIHLNATRNEYPAECMKAAINAVIGGSSLQHAAEMYSIPKTVLWRRIQKEGYQILRSEMKRSYGSDKREAAVKALERGENLTKVALEFQIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKKTRLEEAVAACKGGRMSQAAASMTYHIPKTTIWRRLQQDGKKHNRASNSKRQQRLTNTNEETQEKPQEGSEYAFCEVSSEIPIAYIDESSIPENSVIILTTDDVQAINLEEGRQIIVSSGSGQEYVPCTLSIEDNANYMPAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01538095;
- 90% Identity
- iTF_01130945; iTF_01475585; iTF_01395042; iTF_01475363; iTF_00252196; iTF_00255204; iTF_01395236; iTF_01199525; iTF_01473093; iTF_00253478; iTF_00292198; iTF_01130726; iTF_01474598; iTF_01198791; iTF_00253706; iTF_01473834; iTF_01474826; iTF_00252941; iTF_00294382; iTF_00251983; iTF_00296687; iTF_00298223; iTF_00770287; iTF_01474064; iTF_00254994; iTF_00295924; iTF_00298453; iTF_00291670; iTF_00292374; iTF_00295158; iTF_00297462; iTF_01198582; iTF_00292855; iTF_00294615; iTF_00252728; iTF_00296152; iTF_01199320; iTF_00291449; iTF_00770489; iTF_00254234; iTF_00297690; iTF_01473306; iTF_00295388; iTF_00254462; iTF_00293086; iTF_00293855; iTF_00296928;
- 80% Identity
- iTF_00291670; iTF_00291449; iTF_00293855;