Hnig004500.1
Basic Information
- Insect
- Hartigia nigra
- Gene Symbol
- KBTBD4
- Assembly
- GCA_031001745.1
- Location
- JARPRG010000286.1:1515512-1517606[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 7.4 8.8e+03 -3.5 0.3 31 40 181 191 181 191 0.88 2 5 3.7e-06 0.0045 16.7 0.0 2 38 200 236 199 242 0.86 3 5 5.8e-12 6.9e-09 35.3 0.1 5 39 253 286 250 293 0.85 4 5 0.092 1.1e+02 2.6 0.0 21 34 320 333 306 338 0.80 5 5 3.8e-12 4.5e-09 35.9 0.1 3 39 363 399 361 405 0.91
Sequence Information
- Coding Sequence
- ATGTCTGAAGTTGCCAGTCAACCTCAAATTGACCAAAGCTACTGTTTCAAATGGGGCGATTATCAGAATCATTTATCAGGCGTTATTCGCCAGCTGCTGGAGGAGGATTGCATGGTGGATGTAACTCTCTCTGCAGCGGGAGAACGTATTCATGCTCATCGGATTGTCTTGTGCGCTTGTAGCACattatttcaagAAGTCCTTAGTCAGGTTAACGAAGACCATCCAACAATTATATTAAGTGATATATCTCCGCAAGATGTTAGATCTATTGTGGAATTTACGTACCATGGTGAAGTACGTATACCTGTAGAGAATATTAGCAATTTATTGGATGCAGCGCATTCCTTAAAGATATGTGGCCTTATGGAGATCGATGGTTTGGATGAGAATGATGCATCTACCAGTACAAAAGACTTTGGTGACGATAGTGTAGAGCCATTAACTGAATTGAATGAAACAGATGATAAAGCACTAAGTGCCCTGGAAAGCGAATATGATAGCATTACTGATAGTACTGAACAGAATGTACCTGGAGTTTCtactataaacaaaaaaaggaaaagaagacgtgatataataaaaagagagtaTAGCGAAGACATGCTTGTATCAGCTATCAATGATCTTCGTTCTGGACAGACACTGATAGAAGCTTctaccaaaaataatattccgcGTTCTACACTGTATATGCGCGCTAAAGCATTGGGAATACATTTAAATGCTACGAGAAATGAATATCCTGCAGAATGTATGAAAGCTGCTATAAATGCTGTcattgGAGGTTCAAGTTTACAACACGCAGCGGAGATGTATAGTATTCCCAAAACTGTTCTGTGGAGACGTATACAGAAGGAAGGATACCAAATCTTACGTTCTGAAATGAAACGATCGTATGGCTCTGACAAAAGAGAAGCTGCTGTTAAAGCTTTGGAAAGGGGAGAAAATCTGACTAAAGTGGCACTTGAGTTTCAGATTCCAAAAACGACATTGTTTAGAGACAAAGCCAGATTAGTAGACGAAGGTAAATTACCACTATCATTCTGGAAAAAGcgtaaaacagaaaatgaagaatcgaaAAAGACTCGCCTGGAAGAAGCAGTAGCTGCTTGTAAAGGAGGTAAAATGTCACAGGCGGCAGCATCAATGACTTACCACATCCCAAAAACAACCATATGGCGACGTTTACAACAAGAGGGGAAAAAACATAATCGAACATCAAATAGCAAACGACAGCAGAGATTGACAAACACAAACGAAGAAACACAGGAGAAGCCACAGGAAGAATCTGAATATGCTTTTTGCGAgGTATCTTCGGAAATTCCAATAACATACATAGATGAGAATAGTATCCCTGAAGACTCTGTTATCATTTTGACTACTGATGATGTGGAAGCAATTAACTTGGAGGAGGGTAGACAAATTATCGTTAGCtcggAATCTGGTCAAGAATATGTTCCTTGTACTTTAAGCATAGAAGATAATGCAAATTACACACCAGCTGAGAGTTAA
- Protein Sequence
- MSEVASQPQIDQSYCFKWGDYQNHLSGVIRQLLEEDCMVDVTLSAAGERIHAHRIVLCACSTLFQEVLSQVNEDHPTIILSDISPQDVRSIVEFTYHGEVRIPVENISNLLDAAHSLKICGLMEIDGLDENDASTSTKDFGDDSVEPLTELNETDDKALSALESEYDSITDSTEQNVPGVSTINKKRKRRRDIIKREYSEDMLVSAINDLRSGQTLIEASTKNNIPRSTLYMRAKALGIHLNATRNEYPAECMKAAINAVIGGSSLQHAAEMYSIPKTVLWRRIQKEGYQILRSEMKRSYGSDKREAAVKALERGENLTKVALEFQIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEESKKTRLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQEGKKHNRTSNSKRQQRLTNTNEETQEKPQEESEYAFCEVSSEIPITYIDENSIPEDSVIILTTDDVEAINLEEGRQIIVSSESGQEYVPCTLSIEDNANYTPAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01538095;
- 90% Identity
- iTF_00293633;
- 80% Identity
- iTF_01199525;