Ttab005003.1
Basic Information
- Insect
- Trachelus tabidus
- Gene Symbol
- KBTBD4_1
- Assembly
- GCA_030142655.1
- Location
- JARQTI010000411.1:1556710-1558929[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4e-06 0.0059 16.7 0.0 2 38 200 236 199 242 0.86 2 4 7.5e-09 1.1e-05 25.4 0.0 5 39 253 286 250 293 0.85 3 4 0.098 1.5e+02 2.6 0.0 21 34 320 333 306 338 0.80 4 4 1.7e-12 2.6e-09 37.1 0.0 3 39 363 399 348 405 0.94
Sequence Information
- Coding Sequence
- ATGTCTGAAGTTGCCAGTCAACCTCAAATTGACCAAAGCTACTGTTTCAAATGGGGCGATTATCAGAATCATTTATCAGGCGTTGTTCGCCAGCTGCTGGAGGAGGATTGTATGGTGGATGTAACTCTCTCTGCAGCAGGAGAACGTATTCATGCTCATCGGATTGTCCTGTGCGCTTGTAGCACATTGTTTCAAgaAGTCCTTAGTCAGGTTAATGAAGATCATCCGACAATTATATTAAGTGATATATCTCCTCAAGATGTGAGATCTATTGTAGAATTTACGTACCATGGCGAAGTACGTATACCTGTAGAGAATATTAGCAATTTATTGGATGCAGCACATTCTCTAAAGATTTGTGGCCTTATGGagATTGATGGTTTGGATGAAAATGATGCATCCACCAGTACAAAAGACTTTGGCGATGATAGTATAGAGCCATCAACTGAAATGAATGAAACGGAAGATAAAGTACTAAGTGCTTTGGAAAATGAATATGATAGTATTACTGATAGTATCGAACAGAACGTACCTGGAGTTTCTActacaaataaaaagagaaagagaagacgTGATATAATAAAGAGAGAATATAGTGAAGATATGCTTGTATCAGCTATCAATGATCTACGTTCTGGACAGACACTGATAGAAGCTTctaccaaaaataatattccccGTTCTACGCTGTATATGCGCGCTAAAGCATTAGGAATACATTTAAATGCTTCGAGAAACGAATATCCTGCAGAATGTATGAAAGCTGCTATAAATACTGTTATTGgAGGTTCAAGTTTGCAATATGCATCAGAGATGTATAGTATTCCCAAAACTGTTCTATGGAGACGTATACAAAAGGAAGGATATCAAATTTTGCGTTCTGAAATGAAAAGATCTTATGGCTCTGATAAAAGAGAAGCAGCTGTCAAAGCTTTGGAAAGAGGAGAAAATCTGACTAAAGTGGCACTTGAATTTCAGATTCCAAAAACGACATTGTTTAGAGACAAGGCCAGATTGGTAGACGAAGGTAAATTACCACTATCATTTTGGAAAAAGcgtaaaacagaaaatgagGAATTGAAAAAGACACGCCTAGAAGAAGCAGTAGCTGCCTGCAAGGGAGGTAAAATGTCACAGGCAGCAGCATCAATAACTTATCATATCCCAAAAACAACTATATGGCGACGTCTACAACAAGATGGGAAAAAACATAATCGAACATCAAATAGTAAACGACAGCAGAGAGTGACAAACACAAATGAAGAAACACAGGAGAAGCTACAGGAAGGATCTGAATATGCTTTTTGCGAgGTATCTTCGGAAATTCCAATAGCATACATAGATGAGAATAGCATCCCTGAAAACTCTGTTATCATTTTGACTACTGATGACGTGGAAGCGATTAACTTGGAGCAGGGTAGACAAATTATCGTAAGCTCGGGGTCTGGTCAAGATTATGTTCCTTGTACTTTAAGTATAGAAGATAATGCCAATTACATGCCAGCTGAGAGTTAG
- Protein Sequence
- MSEVASQPQIDQSYCFKWGDYQNHLSGVVRQLLEEDCMVDVTLSAAGERIHAHRIVLCACSTLFQEVLSQVNEDHPTIILSDISPQDVRSIVEFTYHGEVRIPVENISNLLDAAHSLKICGLMEIDGLDENDASTSTKDFGDDSIEPSTEMNETEDKVLSALENEYDSITDSIEQNVPGVSTTNKKRKRRRDIIKREYSEDMLVSAINDLRSGQTLIEASTKNNIPRSTLYMRAKALGIHLNASRNEYPAECMKAAINTVIGGSSLQYASEMYSIPKTVLWRRIQKEGYQILRSEMKRSYGSDKREAAVKALERGENLTKVALEFQIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKKTRLEEAVAACKGGKMSQAAASITYHIPKTTIWRRLQQDGKKHNRTSNSKRQQRVTNTNEETQEKLQEGSEYAFCEVSSEIPIAYIDENSIPENSVIILTTDDVEAINLEQGRQIIVSSGSGQDYVPCTLSIEDNANYMPAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01538095;
- 90% Identity
- iTF_00293633;
- 80% Identity
- iTF_01474826;