Cfum004926.1
Basic Information
- Insect
- Cephus fumipennis
- Gene Symbol
- bab1
- Assembly
- GCA_030142355.1
- Location
- JARQSY010000434.1:1602155-1604380[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 9.3 1.2e+04 -3.5 0.3 31 40 181 191 181 191 0.88 2 5 4.7e-06 0.0059 16.7 0.0 2 38 200 236 199 242 0.86 3 5 7.3e-12 9.1e-09 35.3 0.1 5 39 253 286 250 293 0.85 4 5 0.12 1.5e+02 2.6 0.0 21 34 320 333 306 338 0.80 5 5 3.4e-11 4.2e-08 33.2 0.0 3 39 363 399 348 405 0.94
Sequence Information
- Coding Sequence
- ATGTCTGAAGTTGCCAGTCAACCTCAAATTGACCAAAGTTACTGTTTCAAATGGGGCGATTATCAGAATCACTTATCAGGCGTTGTTCAACAGCTGCTGGAGGAGGATTGTATGGTGGATGTAACTCTCTCTGCAGCAGGAGAACGTATTCATGCTCATCGGATTGTCCTGTGCGCTTGTAGCACATTATTTCAAgaaGTCCTTAGTCAGGTCAATGAAGATCATCCGACAATTATATTAAGTGATATATCTCCTCAAGATGTGAGATCTATTGTAGAATTTACGTACCATGGCGAAGTACGTATACCTGTAGAGAATATTAGCAATTTATTGGATGCAGCACATTCGCTAAAGATTTGTGGCCTTATGGagATTGATGGtttggatgaaaatgatgCATCCACCAGTACAAAAGACTTTGGTGATGATAGTATAGAGCCATCAACTGAACTGAATGAAACGGAAGATAAAGTACTAAGTGCTTTGGAAAGTGAATATGATAGTATTACTGATAGTACCGAACAGAACGTACCTGGAGTTTCTACTATAAacaaaaagaggaagagaagacGTGATATAATAAAGAGAGAATATAGTGAAGATATGCTTGTATCAGCTATCAATGATCTACGTTCTGGACAGACACTGATAGAAGCTTctaccaaaaataatatccccCGTTCTACACTGTATATGCGCGCTAAAGCATTAGGAATACATTTAAATGCTACGAGAAATGAATATCCTGCAGAATGTATGAAAGCTGCTATAAATGCTGTTATTGgaGGTTCAAGTTTGCAACACGCAGCAGAGATGTATAGTATTCCAAAAACTGTTCTATGGAGACGTATACAAAAGGAAGGATATCAAATTTTGCGTTCTGAAATGAAAAGATCATATGGCTCTGATAAAAGAGAAGCTGCAGTCAAAGCTCTGGAAAGGGGAGAAAATCTGACTAAAGTGGCACTTGAATTTCAGattccaAAAACAACATTGTTTAGAGACAAGGCCAGATTGGTAGATGAAGGTAAATTACCACTATCATTCTGGAAAAAGcgtaaaacagaaaatgaGGAATTGAAAAAGACACGCCTAGAAGAAGCAGTAGCTGCCTGTAAGGGAGGTAGAATGTCACAGGCAGCAGCATCAATGACTTATCATATCCCAAAAACAACTATATGGCGACGTCTACAACAAGATGGGAAAAAACATAATCGAGCATCAAATAGTAAACGACAGCAGAGATTGACAAACACAAATGAAGAAACACAGGAGAAGCAACAGGAAGGATCAGAATATGCTTTTTGCGAgGTATCTTCGGAAATTCCAATAGCATACATAGATGAGAGTAGCATCCCTGAAAACTCTGTTATCATTTTGACTACTGATGACGTGCAAGCGATTAACTTGGAGGAGGGTAGACAAATTATCGTTAGCTCGGGATCTGGTCAAGAGTATGTTCCTTGTACTTTAAGTATAGAAGATAATGCAAATTACATGCCAGCTGAGAGTTAG
- Protein Sequence
- MSEVASQPQIDQSYCFKWGDYQNHLSGVVQQLLEEDCMVDVTLSAAGERIHAHRIVLCACSTLFQEVLSQVNEDHPTIILSDISPQDVRSIVEFTYHGEVRIPVENISNLLDAAHSLKICGLMEIDGLDENDASTSTKDFGDDSIEPSTELNETEDKVLSALESEYDSITDSTEQNVPGVSTINKKRKRRRDIIKREYSEDMLVSAINDLRSGQTLIEASTKNNIPRSTLYMRAKALGIHLNATRNEYPAECMKAAINAVIGGSSLQHAAEMYSIPKTVLWRRIQKEGYQILRSEMKRSYGSDKREAAVKALERGENLTKVALEFQIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKKTRLEEAVAACKGGRMSQAAASMTYHIPKTTIWRRLQQDGKKHNRASNSKRQQRLTNTNEETQEKQQEGSEYAFCEVSSEIPIAYIDESSIPENSVIILTTDDVQAINLEEGRQIIVSSGSGQEYVPCTLSIEDNANYMPAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01538095;
- 90% Identity
- iTF_00293633;
- 80% Identity
- iTF_00293086;