Tiud004888.1
Basic Information
- Insect
- Trachelus iudaicus
- Gene Symbol
- KBTBD4
- Assembly
- GCA_030142595.1
- Location
- JARQTH010000316.1:1614416-1616642[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.9 2.2e+03 -1.5 0.1 31 41 181 192 180 196 0.84 2 5 4e-06 0.0045 16.7 0.0 2 38 200 236 199 242 0.86 3 5 7.5e-09 8.4e-06 25.4 0.0 5 39 253 286 250 293 0.85 4 5 0.098 1.1e+02 2.6 0.0 21 34 320 333 306 338 0.80 5 5 4.8e-12 5.4e-09 35.6 0.0 3 39 363 399 348 405 0.94
Sequence Information
- Coding Sequence
- ATGTCTGAAGTTGCCAGTCAACCTCAAATTGACCAAAGctactgtttcaaatggggCGATTATCAGAATCATTTATCAGGCGTTGTTCGCCAGCTGCTGGAGGAGGATTGTATGGTGGATGTAACTCTCTCTGCAGCAGGAGAACGTATTCATGCTCATCGGATTGTCCTGTGCGCTTGTAGCACATTGTTTCAAgaaGTCCTTAGTCAGGTCAATGAAGATCATCCGACAATTATATTAAGTGATATATCTCCTCAAGATGTGAGATCTATTGTAGAATTTACGTACCATGGCGAAGTACGTATACCTGTAGAGAATATTAGCAATTTATTGGATGCAGCACATTCTCTAAAGATTTGTGGCCTTATGGagATTGATGGTTTGGATGAAAATGATGCATCCACCAGTACAAAAGACTTTGGTGATGATAGTATAGAGCCATCAACTGAACTGAATGAAACGGAAGATAAAGTACTAAGTGCTTTGGAAAATGAATATGATAGTATTACTGATAGTACCGAACAGAACGTACCTGGAGTTTctactataaataaaaagaggaagagaagacgTGAGAtaataaagagagaatataGTGAAGATATGCTTGTATCAGCTATCAATGATCTACGTTCTGGACAGACGCTGATAGAAGCTTCtaccaaaaataatattccccGTTCTACACTGTATATGCGCGCTAAAGCATTAGGAATACATTTAAATGCTTCGAGAAATGAATATCCTGCAGAATGTATGAAAGCTGCTATAAATACTGTTATTGGAGGTTCAAGTTTGCAATATGCATCAGAGATGTATAGTATTCCCAAAACTGTTCTATGGAGACGTATACAAAAGGAAGGATATCAAATTTTGCGTTCTGAAATGAAAAGATCATATGGCTCTGATAAAAGAGAAGCAGCTGTCAAAGCTCTGGAAAGGGGAGAAAATCTGACTAAAGTGGCACTTGAATTTCAGATTCCAAAAACGACATTGTTTAGAGATAAGGCCAGATTGGTAGACGAAGGTAAATTACCACTATCATTCTGGAAAAAACGTAAAACAGAAAATGAGGAATTGAAAAAGACACGCCTAGAAGAAGCAGTGGCTGCCTGCAAGGGAGGTAAAATGTCACAGGCAGCAGCATCAATGACTTATCATATTCCAAAAACAACTATATGGCGACGTCTACAACAAGATGGAAAAAAACATAATAGAACATCAAATAGTAAACGACAGCAGAGATTGACAAACACAAATGAAGAAACACAGGAGAAGGCACAGGAAGGATCTGAATATGCTTTTTGCGAgGTATCTTCGGAAATTCCAATAGCATACATAGATGAGAATAGCATCCCTGAAAACTCTGTTATCATTTTGACTACTGATGACGTGGAAGCGATTAACTTGGAGGAGGGTAGACAAATTATCGTTAGCTCGgGGTCTGGTCAAGAGTATGTTCCTTGTACTTTAAGTATAGAAGATAATGACAATTACATGCCAGCTGAAAGTTAG
- Protein Sequence
- MSEVASQPQIDQSYCFKWGDYQNHLSGVVRQLLEEDCMVDVTLSAAGERIHAHRIVLCACSTLFQEVLSQVNEDHPTIILSDISPQDVRSIVEFTYHGEVRIPVENISNLLDAAHSLKICGLMEIDGLDENDASTSTKDFGDDSIEPSTELNETEDKVLSALENEYDSITDSTEQNVPGVSTINKKRKRRREIIKREYSEDMLVSAINDLRSGQTLIEASTKNNIPRSTLYMRAKALGIHLNASRNEYPAECMKAAINTVIGGSSLQYASEMYSIPKTVLWRRIQKEGYQILRSEMKRSYGSDKREAAVKALERGENLTKVALEFQIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKKTRLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQDGKKHNRTSNSKRQQRLTNTNEETQEKAQEGSEYAFCEVSSEIPIAYIDENSIPENSVIILTTDDVEAINLEEGRQIIVSSGSGQEYVPCTLSIEDNDNYMPAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01538095;
- 90% Identity
- iTF_00293633;
- 80% Identity
- iTF_01473306;