Bsko001324.1
Basic Information
- Insect
- Bombus skorikovi
- Gene Symbol
- bab1
- Assembly
- GCA_014737355.1
- Location
- JACXIH010000006.1:5585773-5588110[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.3e-18 1.2e-14 53.9 0.0 1 43 28 71 28 73 0.95 2 2 1.2 2.6e+03 -1.6 1.4 6 15 151 160 149 163 0.88
Sequence Information
- Coding Sequence
- ATGTGGCAGAAATGCTGGAACACCAATCAGAGCCTGGTGCACAATCTGCGCTTTCGAGAACGCGGCCCGCTCAAGTCCTGGCGACCGGAAACCATGGCGGAGGCGATCTTCAGCGTGCTGAAAGAAGGATTGTCCTTGAGTCAAGCAGCAAGGAAATACGACATCCCATACCCGACCTTCGTATTGTACGCGAATCGAGTGCACAATATGCTGGGTCCGAGTGCCGATGGAGGAGCCGATCTTCGTCCGAAAGGCAGAGGCAGACCGCAAAGGATTTTGTTGGGTGTTTGGCCCGACGAGCACATTCGCGGTGTGATTCGTGCCGTGGTGTTCCGCGATGGACACTCGCCGCACATGGTGAAGGAAGAGCCGACTTCGATGTATCCGAGTTTGGCAAATTACGCGGCTTGCAACGGTCCCGAAGGCGCGGTCAGCCCCGGAGCGGCAGCCGCGGCCGCGGTTGCTGCGGTCGCTCAAGGACTGCGACATCAAATGTGCAGCATGGTAGCGGCGGCGCACTCGCAGCAACACGATATGATGGCGACAAACCTGTCGACGAATCTGTCGACCAGCCTCTCGTCGAATCTGCAGGCAGCGATGCAAGCCAGCCAGCATCACCACAACAGCAACAACAGCGGTACACCGATTATCGGGAGTAACAACGGCGGTAGCGGCGGAGGCGGCGGGAACAACGGAAACTCGCCGCTAAATTTGGGCTTGGCCAGTCCAGGCTCCGGCGGCCCACCAGAGAGCCCGATGGAGAGTCCTCTGGCGAGTCCGCTCGGCCCTCTGATGGATCCTGGACACATACCTAGCAGCGTGGAAGTCGGGATCGGCGTGAGCGGTATGACGTACAAGCCGGCGCGAAGCTTCGTCAGCCCACGACCGGAGAATCTCTTCCAGGAGGACATCGCGGATCTCGTAAAGAGTCCTCACGGACTCAAGGACAAGGACAAAATTCCCGTTAAGCTGGAACCGCTAACCGACTCGCGTTGCGAATAG
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGHSPHMVKEEPTSMYPSLANYAACNGPEGAVSPGAAAAAAVAAVAQGLRHQMCSMVAAAHSQQHDMMATNLSTNLSTSLSSNLQAAMQASQHHHNSNNSGTPIIGSNNGGSGGGGGNNGNSPLNLGLASPGSGGPPESPMESPLASPLGPLMDPGHIPSSVEVGIGVSGMTYKPARSFVSPRPENLFQEDIADLVKSPHGLKDKDKIPVKLEPLTDSRCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00089441; iTF_00174946; iTF_00174087; iTF_00861795; iTF_00864557; iTF_00862480; iTF_00865234; iTF_00863870; iTF_00863191; iTF_00860301; iTF_00982886; iTF_00873719; iTF_00733885; iTF_01417622; iTF_00087849; iTF_00086084; iTF_01069573; iTF_00085202; iTF_00088698; iTF_00084447; iTF_00087019; iTF_00773714; iTF_00756545; iTF_00754484; iTF_01488468; iTF_01428181; iTF_00140504; iTF_01493496; iTF_01492792; iTF_01234266; iTF_01234946; iTF_00011003; iTF_00064339; iTF_01392685; iTF_01393421; iTF_00460402; iTF_01233566; iTF_01512107; iTF_01514077; iTF_01539521; iTF_00219715; iTF_00225155; iTF_00231235; iTF_00228581; iTF_00225831; iTF_00222440; iTF_00215627; iTF_00223791; iTF_01513392; iTF_00226513; iTF_00216306; iTF_00220499; iTF_00219030; iTF_00224472; iTF_00229272; iTF_00227194; iTF_00233147; iTF_01514748; iTF_00221181; iTF_00214942; iTF_00216991; iTF_00218335; iTF_00223104; iTF_00982208;
- 90% Identity
- iTF_00982886;
- 80% Identity
- -