Basic Information

Insect: Bombus polaris
Gene Symbol: -
Assembly: GCA_014737335.1
Location: JACXIO010000318.1:426499-430781[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.78 79 4.3 4.5 2 23 270 292 269 292 0.96

2 21 0.89 91 4.1 2.2 1 23 342 364 342 364 0.92

3 21 0.0037 0.38 11.6 1.0 1 23 413 435 413 435 0.98

4 21 0.019 1.9 9.4 0.2 1 20 492 511 492 513 0.94

5 21 8.1 8.2e+02 1.1 3.0 1 20 525 544 525 548 0.73

6 21 0.00053 0.054 14.2 1.4 1 23 553 575 553 575 0.97

7 21 0.00044 0.045 14.5 0.2 1 23 623 645 623 645 0.97

8 21 0.00066 0.067 13.9 0.1 1 23 651 673 651 673 0.97

9 21 9.8e-08 9.9e-06 26.0 0.5 2 23 717 739 717 739 0.96

10 21 0.21 21 6.1 3.2 3 23 748 769 746 769 0.93

11 21 0.0026 0.27 12.0 4.2 1 23 777 800 777 800 0.96

12 21 0.00096 0.098 13.4 0.1 3 23 809 829 808 829 0.97

13 21 0.19 19 6.2 0.3 1 20 884 903 884 903 0.96

14 21 0.0046 0.47 11.3 0.2 1 23 922 944 922 944 0.97

15 21 0.016 1.6 9.6 2.1 1 23 958 980 958 980 0.95

16 21 0.0023 0.23 12.3 4.4 2 23 1003 1025 1002 1025 0.94

17 21 0.016 1.6 9.6 1.5 2 23 1077 1099 1076 1099 0.93

18 21 0.0026 0.26 12.1 1.1 3 23 1130 1151 1129 1151 0.93

19 21 2.4 2.4e+02 2.8 0.1 1 23 1158 1182 1158 1182 0.89

20 21 0.054 5.5 7.9 1.8 1 23 1187 1210 1187 1210 0.97

21 21 0.0076 0.77 10.6 0.8 2 23 1240 1262 1240 1262 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.78	79	4.3	4.5	2	23	270	292	269	292	0.96
2	21	0.89	91	4.1	2.2	1	23	342	364	342	364	0.92
3	21	0.0037	0.38	11.6	1.0	1	23	413	435	413	435	0.98
4	21	0.019	1.9	9.4	0.2	1	20	492	511	492	513	0.94
5	21	8.1	8.2e+02	1.1	3.0	1	20	525	544	525	548	0.73
6	21	0.00053	0.054	14.2	1.4	1	23	553	575	553	575	0.97
7	21	0.00044	0.045	14.5	0.2	1	23	623	645	623	645	0.97
8	21	0.00066	0.067	13.9	0.1	1	23	651	673	651	673	0.97
9	21	9.8e-08	9.9e-06	26.0	0.5	2	23	717	739	717	739	0.96
10	21	0.21	21	6.1	3.2	3	23	748	769	746	769	0.93
11	21	0.0026	0.27	12.0	4.2	1	23	777	800	777	800	0.96
12	21	0.00096	0.098	13.4	0.1	3	23	809	829	808	829	0.97
13	21	0.19	19	6.2	0.3	1	20	884	903	884	903	0.96
14	21	0.0046	0.47	11.3	0.2	1	23	922	944	922	944	0.97
15	21	0.016	1.6	9.6	2.1	1	23	958	980	958	980	0.95
16	21	0.0023	0.23	12.3	4.4	2	23	1003	1025	1002	1025	0.94
17	21	0.016	1.6	9.6	1.5	2	23	1077	1099	1076	1099	0.93
18	21	0.0026	0.26	12.1	1.1	3	23	1130	1151	1129	1151	0.93
19	21	2.4	2.4e+02	2.8	0.1	1	23	1158	1182	1158	1182	0.89
20	21	0.054	5.5	7.9	1.8	1	23	1187	1210	1187	1210	0.97
21	21	0.0076	0.77	10.6	0.8	2	23	1240	1262	1240	1262	0.94

Sequence Information

Coding Sequence: ATGGACGAGGTGGTGGAGTTGCAGAATATGGAAGATGTATGTAGACTCTGCCTGTCCACCGATGAGCCAAAATTGTCGGTGTTCGAAACGGGAGACTCTCCGGAGTCCTTAGCCAGCAAGATACAAACTTGTCTATCGATTCAGATTTTAATAACGGATAGATTATCAACGAAAATATGTGCGCAATGTATTAAAAATGTGAATGAGTGGCATAATTACAAGGAAACATGTTTGCGTTCACAAGACAAGTTGCATCGGTGGTTGGAACAACACATGCAACCAAATCCAGTGGTTATAACTATTAAGAATGAACCTGTTGATTTGGACTTTTGTGAGGACAATGTCGAGGTTATTTCTGAATCTACGAATGATTCGGATTTGGAAGCCACTAATCTTGAAGAAAATAATCCTTTAGAAAATAATGATCAAGGTCAGCAATTACCTGATGATGAAGTAGCTTTAGAGAGAGATCAACCAGCTTTAGAGAGAGATCAACCAGCTTTAGAGAGAGATCAACCAGCTTTAGAGAGAGATCAACCAGCTTTAGAGAGAGATCAACCAGCTTTAACAAAAGATATGGATATTTGTATAAAATCTGAACCACAGGATGATTATGACACAGATTGTACTATAGAAATTGAATCTGTTACTGGTAGTGAACTTGTTTTGAATCCCCTTTCAAGCTCAGAGGATAGGATTATGGAAGCTGATTCCACTCAGAAATCCAACGCATCCACATCACCAAGCAAGAAAAAAGTCAGAAGAGGCCCACACACCCATTTTAGAGGTGCACGTGTTTTTAAACAGAAATGTGTACATTGTCAAATTAATTTGCATTCTAAATATTCTTATGCAAAGCATATGGAAAGATTTCATAGTGACAAACAGAATGGTAGTGTTAATCACTTGGAATTGGAAGATGAGGAAGAGCTTGTTGAAGATTTGGAAGATGAATTAATGAGCATGGAGAAGGATGCTCCATTGACACAAGTGCAGCAAAATATTATAAGTCAATTGAAGACATATTCATGTTACTCTTGTGAACAAAGTTTTAGCGATCGTAGAAGTACTCTTTTCCACATTCGTCAGCACATGCCCGATCTAAGACCGCACACGTGTATCGCGTGTTTGACGGAGTTTCCGGATCGATCGATGTATAAAGTACATTGTAGAGCATCGTTCGAGTGTGCAATGAAGATTGCCCTCGTTATACCGAAACAAGGCTTGCAGAAATGCTTCACGTGCAATATGTGTTTACGTTCTCTGCCGGACAGAAAGCAGTTGCTTACTCATCTATCAAAACATTCAGATAAACAGTACGAGGAACTGGTATCTCCAACACGATCTCCTCCTAAATTAAAACCAGTAACTCCTCTGCCATCTTTGAGACAGGAGTCACCGAAAAAATCGTTCAAAGGAAATCGTACTTTGAACATACCCAGCCCTTACAAAAATGGTGATCCTGCGCACAATCATGTATGCGACCTGTGTGGTATGATTTACAGGTACAAGCCAAACATGCTGAAACATAGAGACTTGTGTCAACGTTTATCATCCGACGCCAGAACATCTTATAGATGTGTCCATTGTGGCATGACATATTTGGTGTTCAAAAAGTTTCATTCTCATCTAACACTGGACCACAAAAAGAGTGATTTCATATGTTCTGAATGCGGCAGCAAATTCAAATCCCCTAGTGATTATTTGGAGCATCACAAAGAGCACTCTAATGATCTTAACAAGGGAGGAACTTCTGAATTGAAAAACGATATAGTAAAGGCTACGCAGAACATTTCAAAGCCCATCAAGGATTGGGATACGTTTGAAGCTGAAGTGAATGCTGGTAAACTATCAGACAGTAATCAGTATAGCTGTGCTCTTTGTAATTTGGAATTCACTACTAGAGCTGAACTAATGGAACACAGAAATCTTCATCTGAAAGTGAAAATTTATTCTTGTGTCATCTGTCGTAGTATGTTCAGCAGCGCAGGTGCTTTGGAAATTCACATGAAAGATCATGGTATAGAAGATCCAAATGAAAGAAATGCAAACATCTCCTGTGTGGAGTATGGTGCAGTACAAGAAGATTCACAGGACTCAAATTCAGTAAATGTCAGCGCCACCTCGGATCCTGGCGATAAAAAGAACGAGTGCGACAGGTGCGGCAAGGTATTCTCGAATAGCGCTAATCTTAAGAGGCATATCAGAAATATTCACAATGTTATCAGAGGCAACATCATCTGCGCCCACTGTCGGCGAACGTTCAAGAGTAAAGAGTCGCATGACCGACACTTAGCAACTGATCACCCAAAGATTGCGAAGTCTATACATCAGTGTTCTAAATGTCGAAAGACTTTCTTCTTCAGAGCTAACCTAAATCTTCACTTTGAAACTGCCCATGCTCAGGAATTAGGTGGTCATGGATGTGACATTTGCGGTAAGATTTTCATGGAAGAATCATCTCTAAAGATACACAGGAGCTGGCACAATCGAGCAAACTCTAGATTGAGTTTACGATTTATGAAGAAAGATGTCCAAAAGCCATTGACCCAGACTAAACAAGAGGAATCTTTCAATTCCAGTATGACCCGACCAGCTAGAGCACGAAAATCTTACCCAAATTTACCTCCAACAAAGCCAAATGGTAATTTCCAATGCCAAGTATGCAGTGACAAGTTCAATGATGTAACAGAATTGAGGACACACTTATGGGATGTGCACTGTGCTCGTAATAAAGCTGAGAAAAGCTTTTCAGGTGACGAGTTTCAATGTGAGCTTTGCACAAATGTTTTCCCTGATAAGGAGACATTAGACATGCATACGCAGTGGCACAAAGCTCAACCTATTCTTGATGATGTAAAGAAATCTGATCACATTTGTGACATTTGTGGAAAACTATACAGCTCCAAAAAGATACTGTCAAGACATAAGAAGCTTCACAAATCCACAGTCGTAGCTGCTGCAAAGCTACAATCAGCTGGCAAGAACTTAGCAAGTAGTCCACTTGTATGCACCCTCTGTCACAAGGTGTTCAATAGTACTCGGTCACTTCATCGTCACAGGCTCAACCTACATGCTAACATATTTAATCAACAACCCGAACATGTATACAACAACGCGAGAAGACTATCTCAAGAAGAGCAAAGATCTAAGAAAATAAAATTAGAAGAGGAGGATAAAAAAGCACCTCTCCCCATGGATGCCATGAGCGCAGGCAGGAAGTCAGTTATGTGCCACGTCTGTAGGAAGTTCTTTGCAAACATGAGCGTATTGTACAAGCACAAACAATTGGTGCATAATAAGACTCACGTGAATCTGTTACAGAATCTAGCCAAGTCATATAATATCGAATGTATACCATTACCCAGCAATGATGGTAAAGTCCTTTGCAACATTTGCTACAAAAAGTTTTCTGGTGTGTCGAATCTGCGCCAGCATTTTACCATAAAACATAAAAATGCTCCTCCCAAATTTGCTTGTTCTGTAGACGGTTGCAAGCTCACGTTCCCAACGCCGACAATCGTAAAGAACCATGAATTGTCACACAACAGCATTATCTATAGTTGCACCTTATGCGATAGGCATGTGTTCAACAAGACAGCAATGTCAGATCACTTGCTGACGACGCACAACACTATCTACAATGCCGAGAACAGCAAGAACTTCCACAGAGAGATGGATTTGACCAAATATGTGGTGGAGGGTGCAGTAGACGCGACTTGTCCTCAATGCAAGATCAAGTATCCCAACAATAGGGCTTTGAAGATTCACTACTTCAAGTTCCACGATGGTACAAACCAGTAG
Protein Sequence: MDEVVELQNMEDVCRLCLSTDEPKLSVFETGDSPESLASKIQTCLSIQILITDRLSTKICAQCIKNVNEWHNYKETCLRSQDKLHRWLEQHMQPNPVVITIKNEPVDLDFCEDNVEVISESTNDSDLEATNLEENNPLENNDQGQQLPDDEVALERDQPALERDQPALERDQPALERDQPALERDQPALTKDMDICIKSEPQDDYDTDCTIEIESVTGSELVLNPLSSSEDRIMEADSTQKSNASTSPSKKKVRRGPHTHFRGARVFKQKCVHCQINLHSKYSYAKHMERFHSDKQNGSVNHLELEDEEELVEDLEDELMSMEKDAPLTQVQQNIISQLKTYSCYSCEQSFSDRRSTLFHIRQHMPDLRPHTCIACLTEFPDRSMYKVHCRASFECAMKIALVIPKQGLQKCFTCNMCLRSLPDRKQLLTHLSKHSDKQYEELVSPTRSPPKLKPVTPLPSLRQESPKKSFKGNRTLNIPSPYKNGDPAHNHVCDLCGMIYRYKPNMLKHRDLCQRLSSDARTSYRCVHCGMTYLVFKKFHSHLTLDHKKSDFICSECGSKFKSPSDYLEHHKEHSNDLNKGGTSELKNDIVKATQNISKPIKDWDTFEAEVNAGKLSDSNQYSCALCNLEFTTRAELMEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIEDPNERNANISCVEYGAVQEDSQDSNSVNVSATSDPGDKKNECDRCGKVFSNSANLKRHIRNIHNVIRGNIICAHCRRTFKSKESHDRHLATDHPKIAKSIHQCSKCRKTFFFRANLNLHFETAHAQELGGHGCDICGKIFMEESSLKIHRSWHNRANSRLSLRFMKKDVQKPLTQTKQEESFNSSMTRPARARKSYPNLPPTKPNGNFQCQVCSDKFNDVTELRTHLWDVHCARNKAEKSFSGDEFQCELCTNVFPDKETLDMHTQWHKAQPILDDVKKSDHICDICGKLYSSKKILSRHKKLHKSTVVAAAKLQSAGKNLASSPLVCTLCHKVFNSTRSLHRHRLNLHANIFNQQPEHVYNNARRLSQEEQRSKKIKLEEEDKKAPLPMDAMSAGRKSVMCHVCRKFFANMSVLYKHKQLVHNKTHVNLLQNLAKSYNIECIPLPSNDGKVLCNICYKKFSGVSNLRQHFTIKHKNAPPKFACSVDGCKLTFPTPTIVKNHELSHNSIIYSCTLCDRHVFNKTAMSDHLLTTHNTIYNAENSKNFHREMDLTKYVVEGAVDATCPQCKIKYPNNRALKIHYFKFHDGTNQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00215203; iTF_00219299; iTF_00221443; iTF_00230853; iTF_00226727; iTF_00228103; iTF_00225416; iTF_00224012; iTF_00219245; iTF_00229485; iTF_00221390; iTF_00222030; iTF_00227406; iTF_00232110; iTF_00215151; iTF_00224687; iTF_00231503; iTF_00217906; iTF_00219986; iTF_00214515; iTF_00222707; iTF_00215893; iTF_00231445; iTF_00218614; iTF_00232726; iTF_00229527; iTF_00219929; iTF_00230809; iTF_00232153; iTF_00222074; iTF_00225371; iTF_00224060; iTF_00224732; iTF_00228156; iTF_00218557; iTF_00226781; iTF_00227454; iTF_00214559; iTF_00215839; iTF_00222656; iTF_00232768; iTF_00217256; iTF_00220714; iTF_00217206; iTF_00220761; iTF_00233421; iTF_00223379; iTF_00216565; iTF_00216532; iTF_00230165; iTF_00230212; iTF_00228861; iTF_00228805;
90% Identity: iTF_00215203; iTF_00227406; iTF_00215151; iTF_00217906; iTF_00227454; iTF_00228103; iTF_00225416; iTF_00229485; iTF_00222030; iTF_00232110; iTF_00231503; iTF_00219986; iTF_00214515; iTF_00231445; iTF_00232726; iTF_00229527; iTF_00219929; iTF_00232153; iTF_00222074; iTF_00225371; iTF_00228156; iTF_00214559; iTF_00232768; iTF_00217256; iTF_00220714; iTF_00217206; iTF_00220761; iTF_00224012; iTF_00224687; iTF_00224060; iTF_00224732; iTF_00219245; iTF_00219299; iTF_00221390; iTF_00221443; iTF_00223379; iTF_00230809; iTF_00230853; iTF_00218557; iTF_00218614; iTF_00226781; iTF_00226727; iTF_00228861; iTF_00228805; iTF_00215839; iTF_00215893; iTF_00222656; iTF_00222707;
80% Identity: -