Bcon012876.1
Basic Information
- Insect
- Bombus confusus
- Gene Symbol
- -
- Assembly
- GCA_014737475.1
- Location
- JACXIV010000040.1:3835314-3840828[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.9 70 4.0 4.5 2 23 243 265 242 265 0.96 2 21 0.82 63 4.1 2.2 1 23 315 337 315 337 0.92 3 21 0.28 22 5.6 1.1 1 23 386 408 386 408 0.98 4 21 0.009 0.7 10.3 0.5 1 20 465 484 465 486 0.95 5 21 0.64 49 4.5 1.5 1 23 498 521 498 521 0.92 6 21 0.00049 0.038 14.3 1.4 1 23 526 548 526 548 0.97 7 21 0.00041 0.031 14.5 0.2 1 23 596 618 596 618 0.97 8 21 0.00061 0.047 14.0 0.1 1 23 624 646 624 646 0.97 9 21 5.8e-06 0.00045 20.3 0.4 2 23 689 711 689 711 0.96 10 21 0.025 1.9 8.9 2.2 3 23 720 741 718 741 0.94 11 21 1.7e-05 0.0013 18.9 1.7 1 23 749 772 749 772 0.98 12 21 0.00018 0.014 15.7 0.1 3 23 782 802 781 802 0.97 13 21 0.71 55 4.3 0.2 2 20 858 876 857 876 0.95 14 21 0.00036 0.028 14.7 0.1 1 23 895 917 895 917 0.98 15 21 0.00052 0.04 14.2 0.3 1 23 931 953 931 953 0.97 16 21 0.0018 0.14 12.5 0.7 3 23 978 999 977 999 0.90 17 21 0.015 1.1 9.6 1.5 2 23 1051 1073 1050 1073 0.93 18 21 0.0025 0.19 12.0 1.1 3 23 1104 1125 1103 1125 0.93 19 21 0.32 25 5.4 0.1 1 23 1132 1156 1132 1156 0.94 20 21 0.0033 0.26 11.6 1.0 1 23 1161 1184 1161 1184 0.98 21 21 0.041 3.2 8.2 2.3 2 23 1214 1236 1214 1236 0.94
Sequence Information
- Coding Sequence
- ATGGACGAGGTGGCAGAGTTGCAGAATTTGGAAAATGTGTGTAGGCTCTGCCTGTCCACCGATGAGCCAAAATTGTCGGTGTTCGAAACGGGAGACTCTTTAGTGTCCATGGTCAGCAAGATACAAGCTTGTCTATCGATTCAGATTTTAATAACGGATAAATTACCAACAAAAATATGTGCGCAATGTATTAAAAATATAAATGAGTGGCATAATTACAAGGAAAAATGTTTGTATTCACAAGATAAGTTGAATCAGTGGTTGGAACAACACCTGCAACCAAATCCGATGGTTGTAACTATCAAGGATGAACCTGTTGATTTGGACTTGTGTGAGGACAATGTCGAGGTTATTTTGGAATCTACTAATGATTCGGACTTGGAAGCCGCTAATCTTGAGGAAAATATAAATACTTTAGAAAATAATGATCAAGGTCAGCAATTACTTGATGATGAAATGGCTTTAGACAGAGATCAACCAGCTTTAACGAAAGACATGGTTATTTGTATAAAATCTGAACCACAAGATGATTGTGACACAGATTGTACTATAGAAATTGAATCTGTTACTGGTAATGAACTTGTTTTGAATCCCCTTTCAAGCTCAGAGGATAGGATTATGGAAGCTGATTCTACTCAGAAATCCAATGCATCCATATTAGCAAGCAAGAAAAAACCCAGAAGAGGCCCACACACCCATTTTAGGGGTGCACGTGTTTTTAAACAGAAGTGTGTATATTGTCAAATTAATTTGCATTCTAAGCATTCTTATGCGAAACACATGGAAAGATTTCATAGTGACAAACAGAATGGTAGTGTTAATCAATTGGAATTGGAAGATGATGAAGAGCTTATTGAAGATTTGGAAGATGAATTAATGAGCATGGAGAAGGATGCTCCATTGACACAAGTGCAGCAAAATATTATAAGTCAATTGAAGACATATTCGTGTTACTCTTGTGAACAAAGCTTTAGTGATCGTAGAAGTACTCTTTTCCATATTCGTCAGCACATGCCTGATCTAAGACCACACACGTGTATTGCGTGTTTAACAGAGTTTCCTGATCGATCAATGTATAAACTACATTGTAGAGCATCGTTCGAGTGTGCAATGAAGATCGCTCTCGTTATACCAAAACAAGGCGAGGAGAAATGCTTCACTTGTAATATGTGTTTACGTCCTATGCAGGACAGAAAGCAGCTGCTTACTCATCTATCAAAACATTCAGATAAACAGTATGAGGAACTGGTATCTCCAACACGATCTCCTCCTAAATTAAAGCCAGTAACTCCTCTGCCATCTTTGAGACAGGAGTCTTCGAAAAAATTGTTCAAAGGAAATTGTACTGCGGACATACCCAGCCCTTACAATAATGGCGATCCTGCACACAATCATAAATGCGATCTGTGTGGTATGATTTACAAATACAAGCCAAACATGCTGAAACATAGAGACCTGTGTCAACGTTTATCATCTGACGCCAGAATATCCTACAGGTGTGTTGATTGTGGCATGACATATTTGGTGTTCAAAAAGTTTCATACTCATATAATGGTGGACCACAACAAGAATGATTTCATATGTTCTGAATGCGGCAGCAAATTCAAATCTCCTAGTGATTATTTGGAGCATCACAAAGAGCACTTTAATAACGTTAATAAACAAGGAACTTCTGTACCGAAAAGCGATACAATAAGGGTTACGCACAACATTTCAAAGTCTATCAAGGATTGGGATACGTTTGAAGCTGAAGTGAATGCTGGTAAACTATCAGACAGTAATCAGTATAGCTGTGCTCTCTGTAATTTGGAATTTACTACTAGAGCTGAACTAATGGAACACAGGAATCTTCATCTGAAAGTGAAGATTTATTCTTGTGTCATCTGTCGTAGTATGTTTAGCAGTGCAGGTGCTTTGGAAATCCACATGAAAGATCATGGTATAGAAGATCCGAATGAAAGAAATGCAAATATCTCCTGCATGGAGTATGGTACAGTAGAAGATTCACAGGACTCAAATTCATTAAATGTCAGCGCCACCTCGGATCCTGGTGATAAGAAGAACGAGTGCTATGTGTGTGCCAAGGTATTCTCGAATACTGCTAATCTTAAAAGGCATATGAGAAATATTCACAATGCTAAGAAAAACCACATCAACTGCTCCTACTGTCGGCGAACGTTCAAGAGTAAAGAAATGCATGAGCGACATGTTGCAACTGATCACCAAAAAATTACGAAGGGCATATATCAGTGTTCTGAATGTCCAAAGAGTTTCTTCTTTCAAGCTAACCTAAATCTTCACTTCCAAACTACCCATCAGATGCAATCAGTAGGTGGTCACGGATGCGATATTTGCGGTAAGATGTTCATAGAAGAATCATCTCTAAAGATACACAGGAGCTGGCACAATCGAGCAAACTCTAGATTCAGTTTAAGATTTATGAAGAAAGAGCTCCCAAAGCCATTGATTCAGACCAAACAAGAGGAATCTTCCAATTCCAGTATGACCCGACAGGCTAGAGCACGAAAATCTTATCCAAATTTACCTCCAGAAAAGCCGAATGGTAATTTACAGTGCCAAGTTTGCAGTGACAAGTTCAACGATGTAACAGAATTGAGGACACACTTATGGGATGTGCACTGTGCTCGCAATAAAACTGAGAAGAGCTTTTCAGGCGACGAATTTCAATGTGAGGTTTGTACAAATGTTTTCCCTGACAAGGAGACATTAGACATGCATATGCAATGGCACAAAGCTAAACCCATTTTTGATATTATAAAGAAATCTAATTACCCTTGTGACATTTGTGGGAAACGGTATAGCTCCGAAAAAATACTGGCGAGACATAAGAAGCTTCACAAATCCACAGCCGTAGCTGCTGCAAAACTACAGTCATCAGCTGGCAAACACGCAGCAAGTAATCCACTTTTATGCACCATCTGTTACAAGATGTTCAGTAGTGTTCGGTCGCTTCAGCGTCACAAGGTCAACATACATGCTAGCATATTCGATGAACAACCACAGCAAGTATACAACAATGCGAGAAAACTGTCTCTAGAAGAGCCAAGATCTAAGAAAATAAAATTAGAAGAAGAGGATAAGAAAGCACCTATTGCCATGGATGCCATGAGCGCGGGAAAGAAGTCGGTTATGTGCCACGTCTGTAGGAAATTCTTTGCGAACATGAGTGTGTTGTACAAGCACAAACAATTGGTGCACAATAAGAATCACACAAATCTGATACAGAATCTAGCCAAGTTATATAATATGGAATGTGTACCATTACCCAGCAATGATGGTAAAGTCCTTTGCAACATTTGCTACAAAAAGTTTACTGGTGTGTCGAATCTGCGCCAGCATTTTACTATAAAACATAAAAATGTTCTGCCCAAGTATGCTTGTTCTATAGACGGCTGCAAGCTTACGTTCCCAACGCCGATGATTTTAAAGAACCACGAATTGTCACACACCAGCATTATCTACAGTTGCACCATATGCGACAGACACGTGTTCAGCAAGGCAGCAATGTCAGATCATATGTTGACGACACACAACACTGTCTACAACGCTGAGAACAGCAAGAACTTCCACAGAGAGATGGATTTGACCAAATATGTGGTGGAAGGTGCAGTAGACGCGACTTGTCCTCACTGCAAGATCAAATATCCCAACAATAGGGCCATGAAGATTCACTACTTCAAGTTCCACGAGGGTACAAACCAGTAG
- Protein Sequence
- MDEVAELQNLENVCRLCLSTDEPKLSVFETGDSLVSMVSKIQACLSIQILITDKLPTKICAQCIKNINEWHNYKEKCLYSQDKLNQWLEQHLQPNPMVVTIKDEPVDLDLCEDNVEVILESTNDSDLEAANLEENINTLENNDQGQQLLDDEMALDRDQPALTKDMVICIKSEPQDDCDTDCTIEIESVTGNELVLNPLSSSEDRIMEADSTQKSNASILASKKKPRRGPHTHFRGARVFKQKCVYCQINLHSKHSYAKHMERFHSDKQNGSVNQLELEDDEELIEDLEDELMSMEKDAPLTQVQQNIISQLKTYSCYSCEQSFSDRRSTLFHIRQHMPDLRPHTCIACLTEFPDRSMYKLHCRASFECAMKIALVIPKQGEEKCFTCNMCLRPMQDRKQLLTHLSKHSDKQYEELVSPTRSPPKLKPVTPLPSLRQESSKKLFKGNCTADIPSPYNNGDPAHNHKCDLCGMIYKYKPNMLKHRDLCQRLSSDARISYRCVDCGMTYLVFKKFHTHIMVDHNKNDFICSECGSKFKSPSDYLEHHKEHFNNVNKQGTSVPKSDTIRVTHNISKSIKDWDTFEAEVNAGKLSDSNQYSCALCNLEFTTRAELMEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIEDPNERNANISCMEYGTVEDSQDSNSLNVSATSDPGDKKNECYVCAKVFSNTANLKRHMRNIHNAKKNHINCSYCRRTFKSKEMHERHVATDHQKITKGIYQCSECPKSFFFQANLNLHFQTTHQMQSVGGHGCDICGKMFIEESSLKIHRSWHNRANSRFSLRFMKKELPKPLIQTKQEESSNSSMTRQARARKSYPNLPPEKPNGNLQCQVCSDKFNDVTELRTHLWDVHCARNKTEKSFSGDEFQCEVCTNVFPDKETLDMHMQWHKAKPIFDIIKKSNYPCDICGKRYSSEKILARHKKLHKSTAVAAAKLQSSAGKHAASNPLLCTICYKMFSSVRSLQRHKVNIHASIFDEQPQQVYNNARKLSLEEPRSKKIKLEEEDKKAPIAMDAMSAGKKSVMCHVCRKFFANMSVLYKHKQLVHNKNHTNLIQNLAKLYNMECVPLPSNDGKVLCNICYKKFTGVSNLRQHFTIKHKNVLPKYACSIDGCKLTFPTPMILKNHELSHTSIIYSCTICDRHVFSKAAMSDHMLTTHNTVYNAENSKNFHREMDLTKYVVEGAVDATCPHCKIKYPNNRAMKIHYFKFHEGTNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00226094;
- 90% Identity
- iTF_00216532;
- 80% Identity
- iTF_00216532;