Basic Information

Insect: Bombus muscorum
Gene Symbol: -
Assembly: GCA_963971185.1
Location: OZ020128.1:11233478-11237684[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.87 96 4.3 4.5 2 23 243 265 242 265 0.96

2 21 1 1.1e+02 4.1 2.2 1 23 315 337 315 337 0.92

3 21 0.0042 0.47 11.6 1.0 1 23 386 408 386 408 0.98

4 21 0.021 2.3 9.4 0.2 1 20 465 484 465 486 0.94

5 21 8.8 9.7e+02 1.2 3.5 1 23 498 521 498 521 0.79

6 21 0.00059 0.066 14.3 1.4 1 23 526 548 526 548 0.97

7 21 0.0005 0.055 14.5 0.2 1 23 596 618 596 618 0.97

8 21 0.00074 0.081 14.0 0.1 1 23 624 646 624 646 0.97

9 21 1.2e-07 1.3e-05 25.9 0.3 3 23 691 712 690 712 0.96

10 21 0.12 14 7.0 4.1 3 23 721 742 719 742 0.93

11 21 0.003 0.33 12.1 4.2 1 23 750 773 750 773 0.96

12 21 0.0011 0.12 13.5 0.1 3 23 782 802 781 802 0.97

13 21 0.21 23 6.3 0.3 1 20 856 875 856 875 0.96

14 21 0.0052 0.57 11.3 0.2 1 23 894 916 894 916 0.97

15 21 0.018 2 9.6 2.1 1 23 930 952 930 952 0.95

16 21 0.0079 0.88 10.7 6.9 1 23 974 997 974 997 0.94

17 21 0.018 2 9.6 1.5 2 23 1049 1071 1048 1071 0.93

18 21 0.0029 0.32 12.1 1.1 3 23 1102 1123 1101 1123 0.93

19 21 2.7 2.9e+02 2.8 0.1 1 23 1130 1154 1130 1154 0.89

20 21 0.037 4 8.6 1.1 1 23 1159 1182 1159 1182 0.97

21 21 0.06 6.6 8.0 0.9 2 23 1212 1234 1212 1234 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.87	96	4.3	4.5	2	23	243	265	242	265	0.96
2	21	1	1.1e+02	4.1	2.2	1	23	315	337	315	337	0.92
3	21	0.0042	0.47	11.6	1.0	1	23	386	408	386	408	0.98
4	21	0.021	2.3	9.4	0.2	1	20	465	484	465	486	0.94
5	21	8.8	9.7e+02	1.2	3.5	1	23	498	521	498	521	0.79
6	21	0.00059	0.066	14.3	1.4	1	23	526	548	526	548	0.97
7	21	0.0005	0.055	14.5	0.2	1	23	596	618	596	618	0.97
8	21	0.00074	0.081	14.0	0.1	1	23	624	646	624	646	0.97
9	21	1.2e-07	1.3e-05	25.9	0.3	3	23	691	712	690	712	0.96
10	21	0.12	14	7.0	4.1	3	23	721	742	719	742	0.93
11	21	0.003	0.33	12.1	4.2	1	23	750	773	750	773	0.96
12	21	0.0011	0.12	13.5	0.1	3	23	782	802	781	802	0.97
13	21	0.21	23	6.3	0.3	1	20	856	875	856	875	0.96
14	21	0.0052	0.57	11.3	0.2	1	23	894	916	894	916	0.97
15	21	0.018	2	9.6	2.1	1	23	930	952	930	952	0.95
16	21	0.0079	0.88	10.7	6.9	1	23	974	997	974	997	0.94
17	21	0.018	2	9.6	1.5	2	23	1049	1071	1048	1071	0.93
18	21	0.0029	0.32	12.1	1.1	3	23	1102	1123	1101	1123	0.93
19	21	2.7	2.9e+02	2.8	0.1	1	23	1130	1154	1130	1154	0.89
20	21	0.037	4	8.6	1.1	1	23	1159	1182	1159	1182	0.97
21	21	0.06	6.6	8.0	0.9	2	23	1212	1234	1212	1234	0.94

Sequence Information

Coding Sequence: ATGGACGAGGTGGTGGAGTTGCAGAATATGGAAGATGTGTGTAGACTCTGCCTGTCCACCGATGAGCCAAAATTGTCGGTGTTCGAAACGGAAGACTCTCCGGTGCCCATAGTCAACAAGATACAAGCTTGTCTATCGATTCAGATTTTAATAACGGATAAATTATCAACAAAAATATGTGCACAATGTATCAAAAATGTGAATGAGTGGCATAATTACAAGGAAACATGTTTGCGTTCACAAGACAAGTTGCATCGGTGGTTGGAACAACACATGCAACCAAATCCAGTGgttgaaactattaagaatGAACCTGTTGATTTTGACTTCTGCGAGGACAATGTTGAGGTTATTTCTGAATCTACCAATGATTCGGATTTGGAAGCCACTAAtcttgaagaaaataataatcctttagaaattaatgatCAAGGTCAACAATTACCTGATGATGACGTAGCTTTAGACAGAGATCAACCAGCTTTAACGAAAGATAcggatatttgtataaaatctGAACCACAAGACGATTATGATACAGATTGTACTATAGAAATTGAATCTGTTACTGGTAGTGAACTTGTTTTGAATCCCCTTTCAAGCTCAGAGGATAGGATTATGGAAGCTGATTCCACTCAGAAATCCAACGCATCCACATCTGCAAGCAAGAAAAAAGTCAGGAGAGGTCCGCACACCCATTTTAGGGGCACACGTGTTTTTAAACAGAAATGTGTACATTGTCAAATTAATTTGCATTCTAAGTATTCTTATGCAAAGCATATGGAAAGATTTCATAGTGACAAACAGAATGGTAGTGTTAATCAATTGGAATTGGAAGATGAGGAAGAGCTTGTTGAAGATTTGGAAGATGAATTAATGAGTATGGAGAAGGATGCTCCATTGACACAAGTGCagcaaaatattataagtCAATTGAAGACATATTCATGTTACTCTTGTGAACAAAGTTTCAGCGATCGTAGAAGTACTCTTTTCCACATTCGTCAGCATATGCCCGATCTAAGACCGCACACGTGTATCGCGTGTTTGACGGAGTTTCCGGATCGATCGATGTATAAAGTACATTGTAGAGCATCGTTCGAGTGTGCAATGAAGATTGCTCTCGTTATACCGAAACAAGGCTTGCAGAAATGCTTCACGTGCAATATGTGTTTACGTTCTCTGCCGGATAGAAAGCAGCTGCTTACTCATCTATCGAAACATTCAGATAAACAGTATGAGGAACTGGTATCTCCAACACGATCTCCACCTAAATTAAAACCAGTAACTCCTCTACCATCTTTGAGACAGGAGTCACCGAAAAAGTCGCTTAAAGGAAATCGTACTCTGAACATACCCAGTCCTTACAAAAATGGTGATCCTGCACACAATCATGTATGCGACCTCTGCGGTATGATTTACAGGTACAAGCCAAACATGCTGAAGCATAGAGACCTGTGTCAACGTTTATCATCCGACGCCAGAACATCCTATAGATGTGTCCATTGTGGCATGACATATTTGGTgttcaaaaagtttcattcTCATCTAACGGTGGATCACAAAAAGAGTGATTTCATATGTTCTGAATGTGGCAGCAAATTCAAATCTCCTAGTGATTATTTGGAGCATCACAAAGAGCACTCTAATAATCTTAACAAGGAAGGAACTTCTGAATCGAAAAGCAATATACTAAAGGTTACGCAGAACATTTCAAAGACCATCAAGGATTGGGATACGTTTGAAGCTGAAGTGAATGCTGGTAAACTATCAGACAGTAATCAGTATAGCTGTGCCCTCTGTAATTTGGAATTCACTACTAGAGCTGAACTAATGGAACACAGGAATCTTCATCTGAAAGTGAAGATCTATTCTTGTGTCATCTGTCGTAGTATGTTCAGCAGCGCAGGTGCTTTGGAAATTCACATGAAAGATCATGGTATAGAAGATCCGAATGAAAGAAATGCAAACATCTCCTGCGTGGAGTATGGTGCGGTACAAGAAGATTCACAGGACTCAAATTTAGTAAATGTCAGCGCCACCTCGGATCCTGGCGATAAAAAGAACATATGCAATGTGTGCGGCAAGATATTCTCGAATAACGCTAATCTTAAGAGGCATATCAGAAATATTCACAATGTTATCAGAGGCAACATCATCTGCACTCACTGTCGGCGAACGTTCAAGAGTAAAGAGTCGCATGACCGACACTTAGCAACTGATCACCCAAAGATTGCGAAGTCCATACATCAGTGTTCTAAATGTCGAAAGACTTTCTTCTTCAGAGCTAATCTAAATCTTCATTTTGAAACTGCCCATGCTCAGGAATTAGGTGGTCATGGATGCGACATTTGCGGTAAGATTTTCATGGAAGAATCATCTCTAAAGATACACAGGAGCTGGCACAATCGAGCAAACTCTAGATTGAGTTTACGATTTATGAAGAAAGATGTCCAAAAGCCATTAACCCAGACTAAAgaggaatttttcaattccagTATGAACCGACCAGCTAGAGCACGAAAATCTTACCCAAATTTACCTCCAGCAAAGCCAAATGGTAATTTCCAATGTCAAGTTTGCAGTGACAAGTTCAATGATGTAACAGAATTGAGGACACACTTATGGGATGTGCACTGTGCTCGCAATAAAGCTGAGAAGAGCTTTTCAGGTGACGAGTTTCAATGTGAGCTTTGCACAAATGTTTTCCCTGACAAGGAGACATTAGACATGCATACGCAGTGGCACAAAGCTCAACCCATTCTTGATGACGTAAGGAAATCTGATCACATTTGTGACATCTGTGGGAAACTATACAGCTCAAAAAAGATACTGTCGAGACATAAGAAGCTTCACAAATCCACAGTCGTAGCTGTTGCAAAGCTACAGTCAGCTGGCAAGAACTTAGCAAGTAGTCCACATATATGCACCCTCTGTCACAAGGTGTTCAATAATACTCGGTCGCTTCATCGTCACAGGCTCAACCTACATGGTAACATATTTAATCAACAACCCGAACAGGTATACAACAACGCGAGAAGACTGTCTCAAGATGAGCCAAGatctaagaaaataaaattagaagaagaGGATAAAAAAGCACCTCTGCCCATGGATGCCATGAGTGCGGGCAGGAAGTCGGTTATGTGCCACGTCTGTAGGAAGTTCTTTGCGAACATGAGCGTATTGTATAAGCACAAACAATTGGTGCACAATAAGACTCACGCAAATCTGTTACAGAATCTAGCCAAGTCATATAATATCGAATGTATACCGTTACCCAGCAATGATGGTAAAGTCCTTTGCAACATTTGCTACAAAAAGTTTTCTGGTGTGTCGAATCTGCGCCAGCATTTTaccataaaacataaaaatgctCCTCCCAAATTTGCTTGTTCTGTAGACGGTTGCAAGCTCACGTTTCCAACTCCGACAATCGTAAAGAACCATGAATTGTCGCACAACAGCACTATCTATAGTTGTACTTTATGCGACAGACACGTGTTCAACAAGGCAGCAATGTCAGATCACTTACTGACGACACATAACACTATCTACAACGCTGAAAACAGCAAGAATTTCCACAGAGAGATGGATTTGACCAAATATGTGGTGGAGGGTGCAGTAGACGCGACTTGTCCTCAATGCAAGATCAAGTATCCCAACAATAGGGCTATGAAGATTCACTACTTCAAGTTCCACGAGGGTACAAACCAGTAG
Protein Sequence: MDEVVELQNMEDVCRLCLSTDEPKLSVFETEDSPVPIVNKIQACLSIQILITDKLSTKICAQCIKNVNEWHNYKETCLRSQDKLHRWLEQHMQPNPVVETIKNEPVDFDFCEDNVEVISESTNDSDLEATNLEENNNPLEINDQGQQLPDDDVALDRDQPALTKDTDICIKSEPQDDYDTDCTIEIESVTGSELVLNPLSSSEDRIMEADSTQKSNASTSASKKKVRRGPHTHFRGTRVFKQKCVHCQINLHSKYSYAKHMERFHSDKQNGSVNQLELEDEEELVEDLEDELMSMEKDAPLTQVQQNIISQLKTYSCYSCEQSFSDRRSTLFHIRQHMPDLRPHTCIACLTEFPDRSMYKVHCRASFECAMKIALVIPKQGLQKCFTCNMCLRSLPDRKQLLTHLSKHSDKQYEELVSPTRSPPKLKPVTPLPSLRQESPKKSLKGNRTLNIPSPYKNGDPAHNHVCDLCGMIYRYKPNMLKHRDLCQRLSSDARTSYRCVHCGMTYLVFKKFHSHLTVDHKKSDFICSECGSKFKSPSDYLEHHKEHSNNLNKEGTSESKSNILKVTQNISKTIKDWDTFEAEVNAGKLSDSNQYSCALCNLEFTTRAELMEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIEDPNERNANISCVEYGAVQEDSQDSNLVNVSATSDPGDKKNICNVCGKIFSNNANLKRHIRNIHNVIRGNIICTHCRRTFKSKESHDRHLATDHPKIAKSIHQCSKCRKTFFFRANLNLHFETAHAQELGGHGCDICGKIFMEESSLKIHRSWHNRANSRLSLRFMKKDVQKPLTQTKEEFFNSSMNRPARARKSYPNLPPAKPNGNFQCQVCSDKFNDVTELRTHLWDVHCARNKAEKSFSGDEFQCELCTNVFPDKETLDMHTQWHKAQPILDDVRKSDHICDICGKLYSSKKILSRHKKLHKSTVVAVAKLQSAGKNLASSPHICTLCHKVFNNTRSLHRHRLNLHGNIFNQQPEQVYNNARRLSQDEPRSKKIKLEEEDKKAPLPMDAMSAGRKSVMCHVCRKFFANMSVLYKHKQLVHNKTHANLLQNLAKSYNIECIPLPSNDGKVLCNICYKKFSGVSNLRQHFTIKHKNAPPKFACSVDGCKLTFPTPTIVKNHELSHNSTIYSCTLCDRHVFNKAAMSDHLLTTHNTIYNAENSKNFHREMDLTKYVVEGAVDATCPQCKIKYPNNRAMKIHYFKFHEGTNQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00226094;
90% Identity: iTF_00226094;
80% Identity: -