Taur003216.1
Basic Information
- Insect
- Tiliacea aurago
- Gene Symbol
- -
- Assembly
- GCA_948098905.1
- Location
- OX402604.1:8931906-8935944[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.12 10 7.4 0.9 1 23 59 81 59 81 0.95 2 27 0.52 44 5.4 0.1 2 23 109 131 108 131 0.88 3 27 0.00016 0.013 16.5 0.7 2 23 152 174 151 174 0.96 4 27 0.00079 0.066 14.3 3.6 1 23 179 201 179 202 0.95 5 27 5.2e-05 0.0044 18.0 0.9 1 23 206 229 206 229 0.94 6 27 0.14 12 7.3 0.3 2 23 232 254 231 254 0.95 7 27 0.056 4.7 8.5 1.3 2 20 260 278 259 283 0.91 8 27 0.004 0.34 12.1 1.8 2 23 327 349 326 349 0.94 9 27 0.76 64 4.9 0.1 2 23 378 400 377 400 0.94 10 27 0.0036 0.3 12.3 0.0 1 23 422 445 422 445 0.92 11 27 1.7e-05 0.0014 19.6 1.4 1 23 450 473 450 473 0.95 12 27 0.0001 0.0086 17.1 0.5 1 23 479 502 479 502 0.96 13 27 0.0051 0.43 11.8 2.4 1 23 539 561 539 561 0.96 14 27 0.033 2.8 9.2 0.1 3 23 590 611 590 611 0.96 15 27 0.0043 0.36 12.0 0.8 1 23 631 654 631 654 0.96 16 27 3.4e-05 0.0029 18.6 0.5 1 23 659 682 659 682 0.96 17 27 0.00053 0.045 14.9 0.7 1 23 687 710 687 710 0.96 18 27 0.00069 0.058 14.5 1.1 3 23 714 735 713 735 0.96 19 27 0.01 0.87 10.8 1.3 2 21 743 762 742 763 0.94 20 27 0.011 0.93 10.7 2.6 1 22 818 839 818 841 0.90 21 27 0.79 67 4.9 0.0 2 23 914 937 913 937 0.94 22 27 1.6e-05 0.0014 19.6 0.1 3 23 944 965 943 965 0.94 23 27 0.0029 0.24 12.6 2.8 2 23 970 992 969 992 0.94 24 27 0.0091 0.76 11.0 5.1 1 23 997 1020 997 1020 0.96 25 27 2e-05 0.0017 19.4 5.0 1 23 1024 1047 1024 1047 0.97 26 27 0.00023 0.019 16.0 0.3 2 23 1054 1075 1053 1075 0.96 27 27 8.2e-06 0.00069 20.6 0.6 1 23 1081 1103 1081 1103 0.98
Sequence Information
- Coding Sequence
- ATGTTCGCCTTCCCTCCGTGCACTGCCTTTGCTATCTCAAAAGTACAAAAAAGTAATTTCTTTTCAGATTTGGAAACAGAGGTGACAAAGCACAGTGCTAGTTATCTAAGGAGGAGAAATCTGCAAATATTGCTCAACAATACAACGTTGATACCTTTTAAATGGCGCGGCAAATACCTCTGCTTTTATTGCGGGGACGATACCAAGACGCCCGATCGTCTCCGGAAACACACGAAAGGCCACGGACCTTGCAGTGATAGCGACAGAGCTATACAACTAGTTAAATCAGCTGATATAGAAATCAAAATAGACGTTTCCGATGTGTCCTGCGAGATTTGTTCAGAAAGTTTCCCATTTTTAAACGAAATTATTGACCATTTGATATTTAAACACCAACTGCCTTATGCGAAAGATGTAGAGATGCTGTTATCAGCCTACAGGCTGTTAGATCTACAGTGCCTCCTTTGCGATAAAACCTTCAATTACTTACGTAAATTAATTAGCCATATGAATGTCACTCATCCAAATAACAGCTTTGAGTGTTCCGAATGTAAAAAGAGCTTTAATAAAAAGAGGGATATGGATTCGCACGTAAGACTCCATCATAAGAAGTACCATTCTTGTACCAAATGCGATGAAACGTTTCCATCAAACTCCGCGTTACAGATTCATAGGTCTAACGCTCATTCTTCGACGTGTAACATCTGTTTCCAAGTATTTGCGTCAGATGGCAAGCGGTTAGCTCATCAGAAATCTGACCATGACTCTAATCAGAGCCAATGTGGATTTTGCAATAAAGTTCTAACAACAAAACAAGCCTTTATAAGACATGCTGCTAATTGCGATCATAAACCTCAGGAAACCGTCATAATAGATGACGAAGACAAAAAGATATCCGTCAAAGAAATAAGAGAAAGTTTAGCATGTATCTTTAACATGACAACCGCACTACCTTTCAAATTCTTTATGAATAGGTTACGATGTTTCTATTGCACGAAAGACTTCGCCTCATGTGAAGATTTAAAAGAACATACATCGATAGAACATCCTCACTGCGATATATCCTTTAAGTCCATGAGATTAAGGAACAGATACGACGGTGTCCAAATCAAGGTTGACACTTCTTCTTTGTCTTGTAGACTATGCAATATCACCTTGCAGGATTTGAACGACTTGATTGACCATTTGAGCAAAGAGCATAAGGTGAAATGCGACTCTTCTGTCGAGAGTAATCTGCAGTCGTTCAAACTGATTAAAGACAACTACCCTTGCCCTATTTGCGGGGAAGTCTACAGATATTTTGGCGTTTTACTCAAGCACGTCAGTGCGTCTCATAGTGGCAATAAACATATATGCATGTATTGCGGCAAATCGTTCAGAACTGACCCTAATCTTAGAGCTCATATTTCAAGACGTCATAAAATTGCTGATAATCATAAGTGCGGAAATTGCGATCTAGTTTTTGGGACTAATAGTGCTTTAAGAAGTCATCAAGGCACCGTTCACGATGGTCTGCCAGGGCCGTACGAAGGCTGTACCTCTGAGCGCCGACGGAAAAACTTGAAAATACTGTTCAACCACACCACGATCATGCCATTTAAATGGCGTGGCAAATACCTTTGCTTCTACTGCGGTAAAAACTATATCGAATACACAGAGTTTAGAAAACATACAAAATCCCACGGACTGTGCACCACTAAAGATTACTCCCTAAAACTAATCAAAGGAAATAACATCGAAATTAAAATCGACGTCTCAGAAATCGGATGCGATATCTGCAATGAACCCTTCAGCAGATTCGAAGAAATAATCGACCATTTGATCAGCAAACACAAGATGGAATACAACAAAAATATCGATATACCATTTCAGGAATATCGATTAGTGGATTTTCGATGTTTGTACTGCGAAGAACAGTTTTCTTATTTCGGATATTTGGTTAAACATGTTAATAACGTTCATCCGCAAAACTGTTTTATTTGTGATGATTGTGGAGTTACTTTCAACAAGAAGAGGGACTTGTCTATACATTTAAGGAATTATCACAGACAGGGAGGATACCCCTGCGATTTGTGCTTGAAGAACTTTGAAACTCGCATTATGTTGCGGAGGCATCAAAATAACATGCATTTTAGGCACTGTAAGAGCTGCGGTTTGCGTTTCGCGTCACTTTCTCTCTTACAAAAACATGTACAAGTTGATCATCCCCAAAATGAGAGTAATATGAAGTGCAGTTACTGCTCCAAAGAATTCCACACTTCTTTAGGTTTAAGACAGCATATAAGCAAATGCAAAGTCAAAATCATTTCTCAGGTTGAACCCCCCCACACTTCTTTTCTAAATGACAGTAACATAGAACCTAAAAAAAAGCAGAACATACTACAAATAAGACAGAATATACAGTGCGTACTCAACATGTCGACCGCTGTGCCTTTCAAATTCTTTTCCAAATACTCCTGCTTTTATTGCTCAAAGAAATTCGTAGAATTTGACGAGTTACGCCACCATACCGGTCTTGAACATCCGGCATGCGATTTGAAGTCCAAATGCATGAAGAAATGCAAAGGAGAAAGGATAGCTGTCAAAATTGACATATCTGCGTTAGCTTGTAAAATATGTTGCCTCCCTATGCCTAATTTAGAAGATTTAGTCAACCATTTAATAAACGAACATAAAGCAAACTATGATACGTCAATTTCAGGCTGTTTAGAGCCTTTTCGAGTTATAAAAGACAATATGCCTTGCCCTATATGTCCGGATACCGTCTTTCGATACTTTGGAATATTGCTCCGACATATGAACTCGGAACACAGCAACAACAACCGAATCTGTGACTTCTGCGGTCGAAGCTTCCGTAACGCGGCGAATCTAAACGTGCATATAACCTACGCACATACTGGTTCCTGCGAATGTGACATTTGTGGAGTCAAATACAAGAACCAGTGGTGTTTGGCGCGACATAGAGCGAGGACACACGATGCAAAAGATCATAAATGCCCAAAATGCCCCGAGCAGTTCCAATCACAGTACCATAAACAAAAACATTTAATAAAAATGCATAATGTGGGCCATAAATGTAGTTATTGCGGGAAGATGTTTACCAGGAACTCTTTCATGAAAGACCATGTTAGGCGTACACATTTGAAGGAAAAGAACATCCCTTGCTCCATTTGTAATGAAAAGTTTTTCGATAATTATCTTTTGAGGATGCATATGGTGAAACATGAGGGGGATAGGAAATTTAGTTGCACTGTTTGTGGAAAAGCCTTTTTAAGACGAAGTAATTTAAGCTCGCATATGGAGATGCATAAAAAGTATGGGCATGTGCAATTGCAGATATAA
- Protein Sequence
- MFAFPPCTAFAISKVQKSNFFSDLETEVTKHSASYLRRRNLQILLNNTTLIPFKWRGKYLCFYCGDDTKTPDRLRKHTKGHGPCSDSDRAIQLVKSADIEIKIDVSDVSCEICSESFPFLNEIIDHLIFKHQLPYAKDVEMLLSAYRLLDLQCLLCDKTFNYLRKLISHMNVTHPNNSFECSECKKSFNKKRDMDSHVRLHHKKYHSCTKCDETFPSNSALQIHRSNAHSSTCNICFQVFASDGKRLAHQKSDHDSNQSQCGFCNKVLTTKQAFIRHAANCDHKPQETVIIDDEDKKISVKEIRESLACIFNMTTALPFKFFMNRLRCFYCTKDFASCEDLKEHTSIEHPHCDISFKSMRLRNRYDGVQIKVDTSSLSCRLCNITLQDLNDLIDHLSKEHKVKCDSSVESNLQSFKLIKDNYPCPICGEVYRYFGVLLKHVSASHSGNKHICMYCGKSFRTDPNLRAHISRRHKIADNHKCGNCDLVFGTNSALRSHQGTVHDGLPGPYEGCTSERRRKNLKILFNHTTIMPFKWRGKYLCFYCGKNYIEYTEFRKHTKSHGLCTTKDYSLKLIKGNNIEIKIDVSEIGCDICNEPFSRFEEIIDHLISKHKMEYNKNIDIPFQEYRLVDFRCLYCEEQFSYFGYLVKHVNNVHPQNCFICDDCGVTFNKKRDLSIHLRNYHRQGGYPCDLCLKNFETRIMLRRHQNNMHFRHCKSCGLRFASLSLLQKHVQVDHPQNESNMKCSYCSKEFHTSLGLRQHISKCKVKIISQVEPPHTSFLNDSNIEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRHHTGLEHPACDLKSKCMKKCKGERIAVKIDISALACKICCLPMPNLEDLVNHLINEHKANYDTSISGCLEPFRVIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRARTHDAKDHKCPKCPEQFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCTVCGKAFLRRSNLSSHMEMHKKYGHVQLQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01527571;
- 90% Identity
- iTF_00173442;
- 80% Identity
- -