Mlor026718.1
Basic Information
- Insect
- Mythimna loreyi
- Gene Symbol
- -
- Assembly
- GCA_029852875.1
- Location
- CM056807.1:6726856-6729862[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0028 0.24 12.8 0.0 1 23 77 100 77 100 0.92 2 19 7.2e-05 0.0063 17.8 0.9 1 23 105 128 105 128 0.94 3 19 0.00016 0.014 16.7 0.4 1 22 134 155 134 157 0.90 4 19 0.00015 0.014 16.7 0.5 2 23 163 185 162 185 0.97 5 19 0.0019 0.17 13.3 3.2 1 23 227 249 227 249 0.96 6 19 0.0094 0.82 11.1 0.1 2 23 277 299 276 299 0.94 7 19 0.0056 0.49 11.8 1.7 1 23 319 342 319 342 0.96 8 19 2.8e-05 0.0024 19.1 0.5 1 23 347 370 347 370 0.96 9 19 0.0058 0.5 11.8 0.6 1 23 375 398 375 398 0.96 10 19 0.00053 0.047 15.0 1.1 3 23 402 423 401 423 0.96 11 19 0.0079 0.69 11.3 1.4 2 21 431 450 430 451 0.94 12 19 0.0065 0.57 11.6 3.3 1 23 505 528 505 528 0.94 13 19 0.61 53 5.4 0.0 2 23 601 624 600 624 0.94 14 19 1.3e-05 0.0011 20.1 0.1 3 23 631 652 630 652 0.94 15 19 0.0022 0.19 13.1 2.8 2 23 657 679 656 679 0.94 16 19 0.007 0.61 11.5 5.1 1 23 684 707 684 707 0.96 17 19 1.5e-05 0.0013 19.9 5.0 1 23 711 734 711 734 0.97 18 19 0.00018 0.016 16.5 0.3 2 23 741 762 740 762 0.96 19 19 6.3e-06 0.00056 21.1 0.6 1 23 768 790 768 790 0.98
Sequence Information
- Coding Sequence
- ATGAGCGAACACCCTCATTGCGATATATCCTTCAAATCTATGAGGTTGCGAAACAGATATGATGGTGTTCAAATCAAAGTGGATACTTCATCTCTATCCTGTCGACTATGCCATATCGCTTTGCAAGATCTGCAAGACGTGATCGACCATTTGACGAAAGAACACAAAGTGAAATGCGACATGACTGTTGAGAGTAACCTGCAAGcgtttaaacttattaaagacaACTATCCATGTCCCATTTGCGGCGAAGTGTACAGATATTTTGGCGTCTTACTCAAACATGTTAGTGCGTCTCACAGTGGCAATAAACATATATGCATGTACTGCGGTAAAGCCTTCAGGACGGACCCTAATCTCAGAGCTCATGTGTCCAGGCGACACAAAACCGCTGACAATCACAAGTGTGATACTTGCGATCTACAATTTCCTACAAACAGTGCGCTGAGAAATCATCAAGGAGCTGCCCACGGTACTAAATCAGTTCAGTGCTTTGAATGCCCCGAAAAATTCACTTCGCTGTATTCAATGCAACGACACTTGATCACTTCTCATGGCACGGGGCATAAGTATGGTCTGCCAGGACCGTACGAAGGCTGTACTTCTGAGCGACGACGGAAAAACTTGAAAATTCTGTTCAACCACACTTCCATCATGCCTTTTAAATGGCGAGGCAAATACCTCTGTTTCTACTGCGGAAAAAACTATACAGAGTACACAGAATTTAGAAAGCACACAAAATCTCACGGACTATGCACCACTAAAGACTACTCCCTCAAACTAATCAAAGGAAATAACGTAGAAATTAAAATCGACGTCTCGGAAATTAGTTGCGACATCTGCAACGAACCCTTCACCAGATTCGAGGAAATAATTGATCATTTGATCTCGAAACATAATATggaatacaacaaaaatattgatatacCCTTCCAGGAGTACCGATTAGTCGATTTTCGATGTTTGCACTGTGAAGAACAGTTTTCTTACTTCGGATATTTAGTTAAACATGTCAACAACGCTCACCCGCAGAATTGTTTCATTTGTGACGATTGTGGGGCTACTTTTAACAAGAAGAGGGACTTGTCGATACATTTGAGGAATTATCATAGACAGGGAGGATATCCGTGTGATTTGTGCTTAAAGAACTTCGAAACACGACTCGTTTTGCGAAGACATCAAAATAATATGCATTTTAGGCATTGTAAAAGCTGTGGCTTACGATTCGCTTCTCTATCTCTCTTGCAAAAACATGTACAAGTCGATCACCCTCAAAATGAGAGTAACATGAAGTGTAGTTACTGCTCCAAAGAGTTCCACACATCTTTAGGTTTAAAACAACATATAAGCAAAtgtaaagtcaaaatcatttctCAGGTCGAACCCCAAACTTCGTTCCTAAACGACAGTAACATAGAACCTAAGAAAAAGCAAAATATCCTACAAATAAGACAAAATATACAGTGTGTACTAAACATGTCAACTGCAGTACCTTTTAAATTCTTCTCCAAATATTCCTGTTTTTATTGCTCAAAGAAATTCGTAGAATTTGACGAATTACGCCACCATACTAGCTTAGAACATCCTGTATGCGATTTGAAGTCCAAGTGCATGAAAAAATGCAAAGGAGAAAGGATAGCTGTCAAAATCGACATCTCAGCTTTAGCTTGTAAACTATGTTGTCTGCCTATGCCTAACTTAGAAGATCTCGTCACCCATTTGATAGCAGAACACAAGGCGAATTATGATACGTCGATCACCGGCTGTTTAGAACCTTTTAGGGTTATAAAAGATAACATGCCCTGTCCGATATGCCCGGACACCGTCTTCAGATACTTCGGGATATTACTTCGGCATATGAACTCTGAACACAGCAACAACAATCGGATCTGTGATTTCTGCGGTCGAAGCTTCCGAAACGCTGCGAATCTCAACGTGCATATAACTTACGCGCATACAGGTTCTTGCGAGTGTGATATTTGTGGAGTTAAATACAAGAATCAATGGTGCTTAGCGCGACATAGGGCTAGGACACATGATGCTAAAGACCATAAATGCCCAAAATGCCCAGAGCAGTTCCAATCACAGtatcacaaacaaaaacatttgatAAAAATGCATAATGTGGGCCACAAGTGCAGTTATTGCGGGAAAATGTTTACTAGAAACTCGTTCATGAAAGATCACGTAAGAAGGACGCACTTGAAAGAAAAGAATATCCCTTGTTCGATTTGTAATGAGAAGTTTTTCGACAATTATCTTCTAAGAATGCACATGGTGAAACATGAAGGTGATAGGAAGTTTAGTTGTACTGTTTGCGGTAAAGCGTTCTTGAGACGAAGCAATTTGAGCTCACATATGGAGATGCACAAAAAATATGGACATGTACAGTTGCAGATTTAA
- Protein Sequence
- MSEHPHCDISFKSMRLRNRYDGVQIKVDTSSLSCRLCHIALQDLQDVIDHLTKEHKVKCDMTVESNLQAFKLIKDNYPCPICGEVYRYFGVLLKHVSASHSGNKHICMYCGKAFRTDPNLRAHVSRRHKTADNHKCDTCDLQFPTNSALRNHQGAAHGTKSVQCFECPEKFTSLYSMQRHLITSHGTGHKYGLPGPYEGCTSERRRKNLKILFNHTSIMPFKWRGKYLCFYCGKNYTEYTEFRKHTKSHGLCTTKDYSLKLIKGNNVEIKIDVSEISCDICNEPFTRFEEIIDHLISKHNMEYNKNIDIPFQEYRLVDFRCLHCEEQFSYFGYLVKHVNNAHPQNCFICDDCGATFNKKRDLSIHLRNYHRQGGYPCDLCLKNFETRLVLRRHQNNMHFRHCKSCGLRFASLSLLQKHVQVDHPQNESNMKCSYCSKEFHTSLGLKQHISKCKVKIISQVEPQTSFLNDSNIEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRHHTSLEHPVCDLKSKCMKKCKGERIAVKIDISALACKLCCLPMPNLEDLVTHLIAEHKANYDTSITGCLEPFRVIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRARTHDAKDHKCPKCPEQFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCTVCGKAFLRRSNLSSHMEMHKKYGHVQLQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01533270;
- 90% Identity
- iTF_00173442;
- 80% Identity
- -