Ogot059370.1
Basic Information
- Insect
- Orthosia gothica
- Gene Symbol
- -
- Assembly
- GCA_949775005.1
- Location
- OX459061.1:11533882-11537846[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.14 28 7.4 0.9 1 23 32 54 32 54 0.95 2 26 0.069 14 8.4 0.0 2 23 82 104 81 104 0.94 3 26 0.00012 0.025 17.1 0.8 2 23 125 147 124 147 0.96 4 26 0.00036 0.072 15.6 3.5 1 23 152 174 152 175 0.95 5 26 1.9e-05 0.0038 19.6 1.5 1 23 179 202 179 202 0.94 6 26 0.086 17 8.1 0.4 2 23 205 227 204 227 0.95 7 26 0.066 13 8.5 1.6 2 20 233 251 232 256 0.91 8 26 0.01 2.1 11.0 3.3 2 23 301 323 300 323 0.93 9 26 0.0041 0.81 12.3 0.0 1 23 396 419 396 419 0.92 10 26 0.00011 0.021 17.3 0.9 1 23 424 447 424 447 0.94 11 26 0.0011 0.21 14.1 0.8 1 23 453 476 453 476 0.96 12 26 0.0028 0.56 12.8 3.2 1 23 513 535 513 535 0.96 13 26 0.038 7.5 9.3 0.1 3 23 564 585 564 585 0.96 14 26 0.0049 0.98 12.0 0.8 1 23 605 628 605 628 0.96 15 26 3.9e-05 0.0077 18.6 0.5 1 23 633 656 633 656 0.96 16 26 0.00098 0.2 14.2 0.9 1 23 661 684 661 684 0.96 17 26 0.00078 0.16 14.5 1.1 3 23 688 709 687 709 0.96 18 26 0.012 2.3 10.9 1.4 2 21 717 736 716 737 0.94 19 26 0.0095 1.9 11.1 3.3 1 23 791 814 791 814 0.94 20 26 0.9 1.8e+02 4.9 0.0 2 23 887 910 886 910 0.94 21 26 1.8e-05 0.0037 19.7 0.1 3 23 917 938 916 938 0.94 22 26 0.0033 0.65 12.6 2.8 2 23 943 965 942 965 0.94 23 26 0.01 2.1 11.0 5.1 1 23 970 993 970 993 0.96 24 26 2.3e-05 0.0045 19.4 5.0 1 23 997 1020 997 1020 0.97 25 26 0.00026 0.052 16.0 0.3 2 23 1027 1048 1026 1048 0.96 26 26 9.4e-06 0.0019 20.6 0.6 1 23 1054 1076 1054 1076 0.98
Sequence Information
- Coding Sequence
- ATGACAAAGCACAGTGCTAGTTATCTAAGGAGGAGAAATCTGCAAATATTACTCAACAATACAACGTTGATACCCTTTAAGTGGCGAGGGAAATACCTCTGCTTCTATTGCGGAGACGATACGAAGACGCCCGATCGTCTCCGGAAACACACGAAAGGCCACGGTCCTTGCAGTGATAGGGACAGGGCTTTACGACTAGTAAAATCAGCTGATGTAGAAATCAAAATAGATGTTTCCGAAGTCACTTGCGAGATTTGCTCAGAAAGCTTCCCCTTTTTAGATGAAATTATCGATCATTTGATTTCTAAACACCAATTGCCTTACGAGAAAAATATAGAGATACTGTTAACGGCGTACAGACTTGTAGACCTTCAGTGTCTCCTTTGCGATAAAAGTTTCAACTTCTTACGTAAATTAATCAGCCATATGAACACCATTCATCCTAATAACAGCTTTGAGTGTTCCGAATGTGAAAAGATGTTTAACAAAAAGAGGGATTTAGATTCGCACTTAAGATTTCATCATAAGAAGTACCATTCTTGTACGAAATGCGATGAAACATTCTCAACGAACTCCGCGCTACAGATCCATAGGTCTAACGCCCATTCATCAACGTGTAACATCTGCTTCCAAGTGTTTTCATCAGACGGGAAGAGGTTAGCTCATCTAAAATCTGACCATGATACTGAACAAACTAAATGTGGATTCTGCAATAAAGTTCTAACAACAAAACAGGCCTTTATAAGACATGCTGCAAATTGTGAACATAAACCTAAGGAAGCAACCATAATAATTGATGACGAAGACAAAAAGATATCCGTCAAAGAAATACGAAAAAGTTTGGCAGCTATATTTAACATGACCACAGCACTTCCTTTTAAATTCTTTATGAATAGACTAAGATGTTTTTATTGCACGAGAGACTTTACGACTTGCGAGGATTTGAAGCAACATTCGTTGTCCGAACATCCTCACTGCGATATATCCTTTAAGTCTATGAGGCTACGGAATAGATATGACGGTGTCCAAATCAAAGTTGATACTTCTGCCTTGTCCTGTAGACTGTGCCACATCGCCTTGCTGGACTTGAACGATGTGATCGACCATTTGACCAAAGAGCATAAGGTGAAATGTGACATGACTGTTGAGAGTAATCTACAGTCGTTTAAACTAATTAAAGATAATTACCCTTGTCCTATATGCGGTGAAGTGTACAGGTACTTTGGCGTCTTATTAAAACACGTAAGTGCGTCTCATAGTGGAAATAAACACATATGCATGTACTGCGGCAAAGCCTTCCGAACGGATCCTAATCTCAGAGCTCATGTCTCAAGGCGTCATAAAGCCGCTGACAATCACAAGTGCAGTAGTTGCGATCTACTGTTTCCTACTAATAGTGCGTTAAGAAACCATCAAGGAACCGTCCACGATGGTCTGCCAGGACCGTACGAAGGCTGTACCTCTGAGCGACGACGGAAAAACTTGAAAATACTGTTCAACCACACAACCATCATGCCTTTTAAATGGCGAGGCAAATACCTTTGCTTCTACTGCGGAAAAAACTATACAGAATACACAGAATTTAGAAAACACACAAAATCCCATGGACTCTGCACAACTAAAGATTACTCCCTGAAACTAATTAAAGGGAATAACGTAGAAATTAAAATCGACGTCTCGGAGGTCGGTTGCGATATCTGCAATGAACCCTTCAGCAGGTTCGAGGAAATAATCGATCATTTGATCTCGAAACACAATATGgaatacaacaaaaatattgatataccATTCCAGGAGTACAGATTAGTTGATTTCCGATGTTTGTACTGCGAGGAGCAGTTCTCTTACTTCGGATATTTGGTTAAGCATGTTAATAACGTTCACCCACAGAACTGCTTTATTTGTGATGACTGTGGAGTTACTTTTAACAAGAAAAGGGATTTGTCTATACATTTAAGGAATTATCATAGACAAGGAGGATACCCATGTGATATGTGCTTAAAGAACTTCGAAACTCGCCTGATGTTGCGGAGACATCAAAATAATATGCATTTTAGGCACTGCAAGAGCTGTGGTTTACGGTTCGCGTCTCTTTCCCTCTTACAAAAACATGTACAAGTCGATCATCCCCAAAATGAGAGCAATATGAAGTGTAGTTACTGCTCCAAAGAGTTCCACACTTCTTTAGGTTTAAAACAGCATATAAGCAAATGTAAAGTCAAAATCATATCTCAGGTCGAACCTCAAACTTCTTTTTTAAACGACAGTGACATAGAAccgaagaaaaaacaaaatatactaCAGATAAGACAGAATATACAGTGTGTACTTAACATGTCAACGGCTGTGCCTTTCAAATTCTTTTCCAAATACTCCTGTTTTTATTGCTCAAAGAAATTTGTGGAATTCGACGAGCTACGTCATCATACCAGCCTTGAACATCCTGTTTGCGATTTGAAGTCCAAATGCATGAAGAAATGCAAAGGAGAAAGGATAGCTGTCAAGATCGACATATCAGCATTAGCTTGCAAATTATGTTGCCTTCCCATGCCTAACTTAGAAGATTTAATCAAGCATTTGATAGCAGAGCATAAGGCGAACTATGATACTTCAATTGCCGGCTGTTTGGAGCCTTTCCGGGTTATTAAAGACAATATGCCTTGCCCTATATGCCCGGATACTGTGTTCCGATACTTCGGAATATTGCTTCGGCATATGAATTCCGAACATAGCAATAACAATCGAATATGTGACTTCTGCGGTCGAAGCTTCAGGAACGCGGCGAATCTAAACGTACACATAACCTACGCGCACACAGGTTCCTGCGAATGTGACATTTGCGGAGTCAAATACAAGAACCAATGGTGTTTAGCTCGACATAGAGCGAGGACACACGACGCAAAGGACCATAAATGCCCAAAATGTCCAGAGCAATTCCAATCTCAAtatcacaaacaaaaacatttaataaagatGCATAATGTTGGCCATAAATGTAGTTATTGCGGTAAAATGTTCACCAGAAACTCTTTTATGAAAGACCATGTGAGGAGAAcacatttgaaagaaaaaaacattccaTGTTCGATTTGTAACGAGAAGTTTTTCGATAATTATCTTCTTAGGATGCATATGGTGAAACATGAGGGTGATAGGAAATTCAGTTGTACTGTTTGCGGGAAAGCCTTTCTGAGACGGAGTAATTTAAGCTCGCATATGGAGATGCATAAGAAGTATGGACATGTGCAGTTGCAGATTTAA
- Protein Sequence
- MTKHSASYLRRRNLQILLNNTTLIPFKWRGKYLCFYCGDDTKTPDRLRKHTKGHGPCSDRDRALRLVKSADVEIKIDVSEVTCEICSESFPFLDEIIDHLISKHQLPYEKNIEILLTAYRLVDLQCLLCDKSFNFLRKLISHMNTIHPNNSFECSECEKMFNKKRDLDSHLRFHHKKYHSCTKCDETFSTNSALQIHRSNAHSSTCNICFQVFSSDGKRLAHLKSDHDTEQTKCGFCNKVLTTKQAFIRHAANCEHKPKEATIIIDDEDKKISVKEIRKSLAAIFNMTTALPFKFFMNRLRCFYCTRDFTTCEDLKQHSLSEHPHCDISFKSMRLRNRYDGVQIKVDTSALSCRLCHIALLDLNDVIDHLTKEHKVKCDMTVESNLQSFKLIKDNYPCPICGEVYRYFGVLLKHVSASHSGNKHICMYCGKAFRTDPNLRAHVSRRHKAADNHKCSSCDLLFPTNSALRNHQGTVHDGLPGPYEGCTSERRRKNLKILFNHTTIMPFKWRGKYLCFYCGKNYTEYTEFRKHTKSHGLCTTKDYSLKLIKGNNVEIKIDVSEVGCDICNEPFSRFEEIIDHLISKHNMEYNKNIDIPFQEYRLVDFRCLYCEEQFSYFGYLVKHVNNVHPQNCFICDDCGVTFNKKRDLSIHLRNYHRQGGYPCDMCLKNFETRLMLRRHQNNMHFRHCKSCGLRFASLSLLQKHVQVDHPQNESNMKCSYCSKEFHTSLGLKQHISKCKVKIISQVEPQTSFLNDSDIEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRHHTSLEHPVCDLKSKCMKKCKGERIAVKIDISALACKLCCLPMPNLEDLIKHLIAEHKANYDTSIAGCLEPFRVIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRARTHDAKDHKCPKCPEQFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCTVCGKAFLRRSNLSSHMEMHKKYGHVQLQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01527571;
- 90% Identity
- iTF_00173442;
- 80% Identity
- -