Basic Information

Gene Symbol
nfxl1
Assembly
GCA_018249125.1
Location
DWJZ01002687.1:5945-8419[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 2 2.9e+04 -7.8 5.6 15 19 134 138 133 138 0.81
2 19 0.021 3.1e+02 2.2 0.2 4 10 169 175 168 176 0.96
3 19 3.1e-07 0.0046 17.6 15.9 3 19 186 202 185 202 0.95
4 19 1.2e-07 0.0017 19.0 12.8 3 19 239 255 237 255 0.91
5 19 2 2.9e+04 -4.5 1.6 6 10 280 284 279 284 0.86
6 19 9.3e-10 1.4e-05 25.7 11.9 1 19 290 308 290 308 0.99
7 19 1.6e-06 0.024 15.4 18.3 3 19 345 361 344 361 0.93
8 19 1.2 1.8e+04 -3.5 1.8 1 3 370 372 365 374 0.58
9 19 0.0033 48 4.8 17.9 3 18 397 412 395 413 0.91
10 19 7.8e-08 0.0011 19.6 18.5 1 18 422 439 422 440 0.98
11 19 4.5e-05 0.66 10.7 5.4 9 19 488 498 486 498 0.92
12 19 0.018 2.6e+02 2.4 7.2 3 11 509 517 508 518 0.89
13 19 0.4 5.9e+03 -1.9 3.4 14 18 547 551 547 552 0.85
14 19 0.29 4.2e+03 -1.4 0.3 8 12 568 572 567 579 0.78
15 19 0.00094 14 6.5 5.4 1 11 588 598 582 599 0.91
16 19 0.45 6.6e+03 -2.0 2.2 13 18 611 616 610 617 0.80
17 19 0.00029 4.3 8.1 16.7 3 18 629 645 628 646 0.84
18 19 2 2.9e+04 -6.5 3.4 9 13 652 656 652 656 0.71
19 19 1.3e-06 0.02 15.6 9.3 1 16 687 701 687 707 0.92

Sequence Information

Coding Sequence
ATGGCGCGAAGATACCGTGACGCGGCGGCAAAGCTACAACAAAATGTGCAGAAACACTTGAAACAAATGAAGGACGTCTCTTCTTCGGAAGATGAAGAGCCCTACGAGTCCAGTGTCCTGGATGGCGTGTTCCAGAGTTACTGGAGAGGTGGTGGAGACAATCGGATGGTGAACAGAACTAAGCATCTTCTAGAAGAAGCTGTTAGTGGTCGGTCAGTGACGTGTCTTATTTGCATTGGATCTATCAAGAAAGTCGATGCGATTTGGACATGCGACCACTGTTTCTGTTATTTCCacttattttgtatacagaAGTGGGCGAACGACAGCATAAGTTTGAGAACAGAAGAAAATGTGGGCCCCATAGCCGTAGTTTTGCCTAAGAAAATTGAATGGTGCTGTCCAAAGTGCAGGCAGTCATATTGTAAAGAAGAAATACCTCGTCGCTATCATTGCTTTTGTGGTAAAACCAATGACCCCTCAAGTCATCCATGGTTGATACCTCATACCTGTGGTGAAATCTGTGGGAAAAGGTTATCACTTGGTGACAATTGTAAACATAAGTGCCTTCTCCTCTGCCATCCTGGACCTTGCCCACCTTGTCCACAAACTGTCAATGGTGTTTGCTACTGTCAAAAGGAGTCAAAACGAGTGAGGTGCAGTGCAGCAAAATGGTCATGTGGTCAACAGTGCAAAAAACTATTGGTATGCAAATCCCATAAATGTGAGAACTTATGCCATGAAGGTGAATGCTCTCCCTGTACATACACAAGTCTTCAACCTTGTCTCTGCGGatctgaaaaaattaaaaggccCTGCAATGATTTGAAATGGCAATGTTCTAAAACATGTAACAAGCCATTCTCATGCGGTTACCATAAATGTGATAGAATATGTCATACAGGAGACTGTGGCTCATGCCCCAATTCTGGGATGACATCTTGCCCCTGTGGAGCTGATAAGAAATTCATAGAATGCCCTAATACCATTGAAACTTGTTTTGGAACATGTAATAAAAAGCATGATGATTGTGAGCATAGCTGCCCTGAGAAATGCCATAAAGGACCTTGTCCTCCATGCCAGGTTGTGATAGAAAAGAACTGTCATTGTGGCAGCCACATGAAGTCTTTACCATGTAGCAAGGAATTCAGATGTGAAACTAAGTGTAGAGGAACAAGACCATGTAGAAAACATGGCTGCGGTAGAAAATGTTGCAATGGAAACTGTCCCCCATGTGAAAAGGTATGCGATAAGCCATTACTTTGTGGTCGCCATAAATGCACAAATATCTGCCACCATGGTCCGTGTTATCCTTGTCATCGAGAATCAAAAATTACCTGTCGTTGTAAAGAAACTTATGTTACAGTTCCCTGTGGCAGAGAAAAACAAATCAAACCTCCAAAATGCAGCCTTCCTTgcaaaattaagtataaatgtgGTCATGTAGATGAAAATAGACATCTCTGTCATTTTGGAGATTGTCCACCCTGCAAAGCTATATGCTTAAAGGCATATTCGAAATGCGAACATAACTGCAAAGCTGTTTGTCATCAGTATGTTGCTGTAGTTTTCAAACAAGTAGAAAAGCCTGCCACACCATGGGAAGTTCAGCCACCGAAGACTAAGATAATGACCCTTGAATGCCCGCCTTGTGATACCCCTGTGCCAGTCACTTGTTTTGGTGAACATGAAATTGAAGATCAACCCTGCCATGCTGCAAGCCGACGGCCCTGTGGAAGAGAGTGTGGTCAGCCTCTAGCTTGTACAAACCATAAATGTGCTCTGCTATGCCATCTACTGATTTCTGATCTTAATTATCCAAACGTGCCTCAATCTTGCAAACCATGTAATAGAGAATGCTCAGTGACACGTCCAGAGAAATGTATGCATAAGTGTCCAAAACGAGGATGCCATCCAGGTCCTTGTCCACCATGTGATATCTTGGAAAGACTGCCATGCCATTGTGGTGTGGCTGAACTATACTTACGCTGTAGAGAACTCAGTTCAGCAACTGAAGAAATGCTGTCTTGCAAGCAGCAATGTCCGAGAAACTTAACATGTGGTCATCGCTGCAAGAATTTTTGTCACTCGGGACAATGTGATCAAAGTCAGATATGtcttaaaaaaactaaagtttaTTGTCCTTGTGGAAATATTAAGAAGGAGGCACCTTGCAAGGCTGTTCAGGATTcagaagttaatataatatgcgATGATAGCTGTGAGGAGAAGAAGAATGCAGCAAAATTGGAGAGAGAGAAGGAAGAACAGCGATTAAAACAGATGGAAGAAGAGAAAAATCGCAAGGAACTGGCTGAATATGAGTGGAAGTTGAGCGGTAAGAAAAAGAAGTATAAAGAAAAGAAGGTTGTGGTTAATGTAGACAATAGAAGCCTGTTGCAGAAATATTGGGTTCCTATTTCATCCCTATTAGTTGTAATGGTAGCTGGatgttactatatattatatgtataa
Protein Sequence
MARRYRDAAAKLQQNVQKHLKQMKDVSSSEDEEPYESSVLDGVFQSYWRGGGDNRMVNRTKHLLEEAVSGRSVTCLICIGSIKKVDAIWTCDHCFCYFHLFCIQKWANDSISLRTEENVGPIAVVLPKKIEWCCPKCRQSYCKEEIPRRYHCFCGKTNDPSSHPWLIPHTCGEICGKRLSLGDNCKHKCLLLCHPGPCPPCPQTVNGVCYCQKESKRVRCSAAKWSCGQQCKKLLVCKSHKCENLCHEGECSPCTYTSLQPCLCGSEKIKRPCNDLKWQCSKTCNKPFSCGYHKCDRICHTGDCGSCPNSGMTSCPCGADKKFIECPNTIETCFGTCNKKHDDCEHSCPEKCHKGPCPPCQVVIEKNCHCGSHMKSLPCSKEFRCETKCRGTRPCRKHGCGRKCCNGNCPPCEKVCDKPLLCGRHKCTNICHHGPCYPCHRESKITCRCKETYVTVPCGREKQIKPPKCSLPCKIKYKCGHVDENRHLCHFGDCPPCKAICLKAYSKCEHNCKAVCHQYVAVVFKQVEKPATPWEVQPPKTKIMTLECPPCDTPVPVTCFGEHEIEDQPCHAASRRPCGRECGQPLACTNHKCALLCHLLISDLNYPNVPQSCKPCNRECSVTRPEKCMHKCPKRGCHPGPCPPCDILERLPCHCGVAELYLRCRELSSATEEMLSCKQQCPRNLTCGHRCKNFCHSGQCDQSQICLKKTKVYCPCGNIKKEAPCKAVQDSEVNIICDDSCEEKKNAAKLEREKEEQRLKQMEEEKNRKELAEYEWKLSGKKKKYKEKKVVVNVDNRSLLQKYWVPISSLLVVMVAGCYYILYV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2