Basic Information

Gene Symbol
nfxl1
Assembly
GCA_951805285.1
Location
OX638236.1:10833635-10836109[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 2 3.5e+04 -7.8 5.6 15 19 134 138 133 138 0.81
2 19 0.01 1.8e+02 3.2 0.3 4 10 169 175 168 176 0.97
3 19 3.1e-07 0.0054 17.6 15.9 3 19 186 202 185 202 0.95
4 19 1.1e-08 0.00018 22.3 13.4 3 19 239 255 237 255 0.91
5 19 7.6e-10 1.3e-05 26.0 12.2 1 19 290 308 290 308 0.99
6 19 1.6e-06 0.028 15.4 18.3 3 19 345 361 344 361 0.93
7 19 0.15 2.5e+03 -0.5 0.3 7 13 365 371 365 372 0.82
8 19 0.23 4e+03 -1.1 1.4 1 11 370 380 370 381 0.81
9 19 0.0033 56 4.8 17.9 3 18 397 412 395 413 0.91
10 19 5.5e-08 0.00094 20.1 18.3 1 18 422 439 422 440 0.98
11 19 0.00044 7.6 7.6 7.2 10 19 489 498 487 498 0.91
12 19 0.021 3.6e+02 2.2 7.0 3 11 509 517 508 518 0.89
13 19 0.37 6.4e+03 -1.8 3.3 14 18 547 551 547 552 0.85
14 19 0.21 3.7e+03 -1.0 0.4 8 12 568 572 567 579 0.79
15 19 5.1e-06 0.088 13.8 4.3 1 11 588 598 588 599 0.97
16 19 0.45 7.8e+03 -2.0 2.2 13 18 611 616 610 617 0.80
17 19 0.0005 8.6 7.4 16.7 4 18 630 645 628 646 0.84
18 19 2 3.5e+04 -6.5 3.4 9 13 652 656 652 656 0.71
19 19 3.7e-06 0.064 14.2 10.1 1 16 687 701 687 707 0.92

Sequence Information

Coding Sequence
ATGGCTCGAAGATATCGTGACGCGGCGGCGAAACTGCAACAAAATGTGCAgaaacatttgaaaaaaatgaagGATGTCTCTTCTTCGGAAGATGAAGAGCCCTACGAGGCCAGTGTCCTGGAAGGAGTGTTCCAGAGTTACTGGAGAGGCGGAGGAGACAATCAGATGGTAAACAGAACAAAGCATCTTCTAGAAGAAGCGGTAAGCGGCCGGTCAGTGACGTGTCTTATTTGCATTGGGTCTATCAAAAGGAACGACGCGATTTGGACCTGTGACCACTGTTTCAGTTACTTCCACCTCTTTTGCATACAAAAGTGGGCGAATGACAGCATAAGTTTACGAACAGAAGAGAATGTAGGACCCATAGCTGTTGTTGTGCCTAAGAAAATTGAATGGTGCTGTCCTAAATGCCGGCAGTCGTACTGCAAAGAAGAAATACCGCGTCGGTATCATTGTTTCTGTGGTAAAACTGAGGACCCCCCATTTCATCCATGGTTGATACCTCATACCTGTGGGGAAGTTTGCGGGAAAAGGTTATCAGTCGGTGAGAATTGTAAACACAAGTGCCTTCTTCTCTGCCACCCTGGGCCTTGCCCGCCTTGCCCACAAACAGTCAATGGCGTCTGTTATTGCCTAAAAGAGTCGAAACGAGTGAGATGCAGTGCAGCAAAATGGTCATGTGGGAAGCAGTGCAAAAAACTATTGCTGTGCAAGTCCCATAAGTGTGAGAACTTATGCCACGAAGGCGACTGCCCGCCCTGTACTTATACCAGTCTACAACCATGCCTCTGTGGatctgaaaaaattaaaagacctTGTGATGATCTAAAATGGCAGTGTtctaaaaaatgtaataaacctTTCTCGTGTGGTTACCACAAATGTGAGAGGATATGTCATGTCGGAGAATGTGGGTCATGCCCCAACTCGGGGATGAGGTACTGCCCCTGTGGAGCCGAAAAGAAATTTATTGAATGCCCGAATACCATTGATACTTGTTTCGGAACTTGTAACAAAAAGCATGATGACTGTGAACATAGTTGTCCTGAGAAATGCCACAAGGGACCATGTCCTCCGTGTCAGGTTGTGATAGAAAAGACATGTCATTGCGGTGCTCACACTAAATCACTGCCATGCTGCAAGGATTTCCGCTGTGAAACTAAGTGCAGAGGGACTAGACCGTGTAGAAAACATGGCTGTGGAAGAAAATGCTGCAACGGAAACTGTCCCCCATGCGAAAAAGTGTGCGATAAACCTTTGCTGTGCGGCAGACATAAATGTACGAGTATCTGTCACCATGGTCCTTGCTATCCTTGCCATCGggaatcaaaaattacttgtcGTTGCAAGGAAACTTATGTAACTGTTCCCTGCGGAAGAGAAAAACATATCAAGCCTCCGAAATGCAGCCTTCCTTGCAAAATTAAGTACAAGTGTGGTCATGTGGATGAAAACCGACACAGTTGTCATTTTGGAGATTGCCCTCCTTGCAAGGCTATATGCTTGAAACCCTATCAAAAATGTGAGCATAACTGCAAAGCTTTATGCCATCAGTATGTTGCTGTGGTTTTCAAGCAGGTTGAAAAACCTGCAACACCATGGGAAGTTCAGCCGCCTAAGACTAAGATTATGACCCTTGAATGCCCACCATGTGAGACTCCTGTACCCGTTACATGTTTTGGTGAACATGAGATTGAAGACCAGCCCTGCCATTCTGCATCTCGACGTCCCTGTGGCAGGGAATGTGGCCAGCCACTAGCCTGCGGAAACCACAAGTGTGCTCTACTTTGCCATCTGCTAAGATCTGATCCTGATTATCCAAATGTGCCTCAGTCATGCAAACCCTGTAACAGAGAATGCTCGGTGACACGCCCGGAGAAATGTCTGCACAAGTGTCCAAAGCGCGGATGTCATCCGGGTCCTTGCCCTCCTTGCGACATCTTGGAAAGACTTCCTTGTCATTGTGGTGTAGCTGAACTATACTTACGCTGTCGAGAACTTAGCTCAGCTACAGAAGATATGTTATCCTGCAAACAGCAATGCCCGAGAAACTTGCCTTGCGGTCACCGCTGCAAGAATAATTGTCACTCAGGACAGTGTGATCAAAATCAGATTTGTCTGAAGAAAACAAAAGTCTATTGTCCTTGTGGGAATATTAAGAAGGAAGCACCTTGCAAAGCTGTTCGGGATTCAGAAGTTAATGTAGTATGTGATCAGAGCTgtgaagaaaagaagaaagcggCGAAATtggagagagagaaagaagaaCAGAGATTGAAAGAGTTGGAAGAAGAGAAAAATCGCAGAGAATTAGCGGAATATGAATGGAAGTTGAGTGGTAAGAAGAAGAAGTATAAAGAAAAGAAGGTTGTGGTTAATGTAGACAACAGAGGTCTCTTGCAGAAATATTGGGTTCCTATTTCCTCCCTATTAGTTGTAATAGTAGCTGGATTTTACTATATATTGTATGTGTAA
Protein Sequence
MARRYRDAAAKLQQNVQKHLKKMKDVSSSEDEEPYEASVLEGVFQSYWRGGGDNQMVNRTKHLLEEAVSGRSVTCLICIGSIKRNDAIWTCDHCFSYFHLFCIQKWANDSISLRTEENVGPIAVVVPKKIEWCCPKCRQSYCKEEIPRRYHCFCGKTEDPPFHPWLIPHTCGEVCGKRLSVGENCKHKCLLLCHPGPCPPCPQTVNGVCYCLKESKRVRCSAAKWSCGKQCKKLLLCKSHKCENLCHEGDCPPCTYTSLQPCLCGSEKIKRPCDDLKWQCSKKCNKPFSCGYHKCERICHVGECGSCPNSGMRYCPCGAEKKFIECPNTIDTCFGTCNKKHDDCEHSCPEKCHKGPCPPCQVVIEKTCHCGAHTKSLPCCKDFRCETKCRGTRPCRKHGCGRKCCNGNCPPCEKVCDKPLLCGRHKCTSICHHGPCYPCHRESKITCRCKETYVTVPCGREKHIKPPKCSLPCKIKYKCGHVDENRHSCHFGDCPPCKAICLKPYQKCEHNCKALCHQYVAVVFKQVEKPATPWEVQPPKTKIMTLECPPCETPVPVTCFGEHEIEDQPCHSASRRPCGRECGQPLACGNHKCALLCHLLRSDPDYPNVPQSCKPCNRECSVTRPEKCLHKCPKRGCHPGPCPPCDILERLPCHCGVAELYLRCRELSSATEDMLSCKQQCPRNLPCGHRCKNNCHSGQCDQNQICLKKTKVYCPCGNIKKEAPCKAVRDSEVNVVCDQSCEEKKKAAKLEREKEEQRLKELEEEKNRRELAEYEWKLSGKKKKYKEKKVVVNVDNRGLLQKYWVPISSLLVVIVAGFYYILYV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00167395;
90% Identity
iTF_00796163;
80% Identity
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