Aage019325.1
Basic Information
- Insect
- Aricia agestis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905147365.1
- Location
- LR990267.1:14399251-14412436[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.9e-70 9.5e-66 222.5 23.7 1 269 103 365 103 383 0.87 2 3 0.057 1.4e+03 -1.3 7.1 1 40 384 423 384 442 0.85 3 3 0.044 1.1e+03 -0.9 0.7 19 39 468 488 456 496 0.50
Sequence Information
- Coding Sequence
- ATGGGCAATAAATCGGAGCTCGCCACCCCCGAGAATACGGACGAGGAGAGCGGGGAGGCCTTCACTGACGGCGACTTCGGCGACTCCGAAGACGACACCACCGTCGTCGAACGCAGCCCGGACTCCAAGCTGCCCGTCGTAGAGACCGTCAACGGCGAAATTGTGGACGATGCCAAAGAAAAGCTAGCGAATGGACACGCGGATTCGGAGAGCAGCGAGGGTGAGAAGGTGGAGGTGGACGGACGGCGGGACTCACACTGCAGCACCAGCTCCATAGTGGGAATCCTCGGGGATCAACAAAACCATGCGGAGCAGCGTCTGGCGGCGCGGCGCGCGGCGCGGGCGGAGGCCCGCGAGATCCGCATGCGGGAGCTGGAGCGACAGCAGCGCGAGCAGGAGGACCACGCCGACAAGGCCTACGACATGTACGCAGAGACAGTAGGCAGACGGGCGGGCGGACGGCTCGCGGCGCTCAGCCCCGCCGCGCACTCCCCGCGCCGCGCCTCGGAGGACTCTGACGATGTGCTCGGCGTCAAGGACCTCCGACACGAGCTGAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTCACCGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCGGCTCGAGCTGCTGGCCGACCGTCTGGAGGAGCTGCACGAGGAGCACGCGCAGCTGCAGCGCGAGCACCGCGACCGCTGCTCCGCGCACGAGCGCCTGCGCCGCGAGCACGAGGCGCTGGAGCGGGAGCTGGCGCGCGCGCGGGACGCCGTGCGGGCGCGTGACTCCGCCGCCGCCGCCGCCGGGTTCGCCTTCGTGGACGCCGCCGCCGCGCCCGATGCGCCCGCGTCCGGCGAGTCGCACGGCTCCGTGCCGCCGCTCGCGCTCGTCTCGCACGCCTCCGAGCGCCTGCTCGACGACGCCGGCGAGGGCACGCTAGATGTCCGATTACAAAACTTGGTAAGCTCGAAGCAGGCGCTGGAGGGCGAGGTGCGGAAACTGAAGCTGCAGTTGAACGACGAGCGCGCGGCGCGGCAGAACGGCGCCGCCTCACATCACGACCGCGAGCATGAGAGCGAGCTGGAGACACTCCGCAAGGCGGTATCTGAGGCGAAGGGTCGGGCGGCGCGCGCGGAGGCGGAGGCGGCGCTGCAGGCGGCGGCGGTGGCGCGACTCGAGGCGCAGGTGGGCCGCCTGCGCGCGCAACACGTGCAGCAGGACGAGAACGAGGAGCAACTCAAACAGGAGCGACGACGGCTGCAGAGAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAACGTCCGAATGCTCGGGAGGCGTTGAACCGCGTGGAGGAACTGGAGACGGAGAACAAACACCTCACCAAGCGGCTCGACAAGCTCAAAAACGCCAAGTCCGCGCTGCTCAAGGACCTGTGA
- Protein Sequence
- MGNKSELATPENTDEESGEAFTDGDFGDSEDDTTVVERSPDSKLPVVETVNGEIVDDAKEKLANGHADSESSEGEKVEVDGRRDSHCSTSSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGGRLAALSPAAHSPRRASEDSDDVLGVKDLRHELKEVEEKFRKAMILTAQLDNDKAALGYRLELLADRLEELHEEHAQLQREHRDRCSAHERLRREHEALERELARARDAVRARDSAAAAAGFAFVDAAAAPDAPASGESHGSVPPLALVSHASERLLDDAGEGTLDVRLQNLVSSKQALEGEVRKLKLQLNDERAARQNGAASHHDREHESELETLRKAVSEAKGRAARAEAEAALQAAAVARLEAQVGRLRAQHVQQDENEEQLKQERRRLQREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRPNAREALNRVEELETENKHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01217512; iTF_00933774; iTF_00403825; iTF_01178582; iTF_00405927; iTF_00288884; iTF_00934778;
- 90% Identity
- iTF_00405927;
- 80% Identity
- -