Ctho024191.1
Basic Information
- Insect
- Cyclargus thomasi
- Gene Symbol
- lrrfip2
- Assembly
- GCA_026546445.1
- Location
- JAOTAV010029762.1:18161-25632[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.6e-70 3.7e-66 223.8 23.8 1 297 102 384 102 387 0.87 2 3 1 2.3e+04 -7.1 14.9 1 44 383 426 383 448 0.63 3 3 0.087 2e+03 -1.9 5.7 8 39 420 453 415 460 0.76
Sequence Information
- Coding Sequence
- ATGGGTAATAAATCGGAGCTCGCAACCCCCGAGAACACGGACGAGGAGAGCGGGGAGGCCTTCACCGACGGCGACTTCGGCGACTCCGACGACGAAGCTACCGTCGTCGAAAGAACCCCAGACTCCAAGTTGCCCGTCGTCGAGACCGTCAACGGAGAAATTGTGGGAAATGCGAAAGAAAAGTTAGCGAATGGACACGCTGATTCCGGCAGCGAAGGCGAGAAGGTGGAGGTGGATGGACGAAGAGACTCGCACTGCAGCACCAGCTCCATTGTGGGAATCCTCGGGGATCAACAGAACCATGCGGAACAACGTCTGGCGGCCCGTCGCGCGGCGCGGGCGGAGGCGCGCGAGATCCGCATGCGCGAGCTGGAGCGGCAGCAGCGCGAGCAGGAGGACCACGCCGACAAGGCCTACGACATGTACGCGGAGACAGTAGGCAGACGAGCGGGTGGGCGGCTCGCGGCTCTCAGCCCCGCCGCGCATTCCCCGCGCCGCGCCTCCGAGGACTCCGACGACGTGCTCGGCGTTAAGGACCTCCGACACGAGCTGAAGGAGGTCGAGGAGAAATTCCGCAAGGCGATGATCCTCACCGCACAACTGGACAACGACAAGGCGGCCCTCGGCTACCGGCTCGAGCTGCTGGCTGACCGCCTGGAGGAGCTGCACGAGGAGCACGCACAGCTGCAGCGCGAGCACCGCGACCGATGCTCCGCGCACGAGCGCCTGCGCCGCGAGCACGAGGCGCTGGAGCGGGAGCTGACCCGGGCGCGGGACGCAGTGCGCGCGCGCGACTCCGCCGCCGCTGCCGCCGGGTTCGCCTTCGTCGACGCCGCGGCCGCACCAGACGCGCCCGCCGCCGGCGAGTCGCACGGCTCCGTGCCGCCGCTCGCGCTCGTCTCGCACGCCTCTGAGCGCCTGCTCGACGACGCCGGCGAGGGCACGCTAGATGTCCGATTACAAAACTTGGTAAGCTCGAAGCAGGCGCTGGAGGGCGAGGTGCGGAAACTTAAGTTGCAGCTGAATGACGAGAGAGCGGCGCGGCAGAACGGTGCCGCCTCACATCACGACCGCGAACACGAGAGTGAACTGGAAACGCTCCGCAAGGCGGTATCGGAGGCCAAGGGGCGGGCAGCACGCGCGGAGGCGGAGGCGGCGCTGCAGGCGGCGGCGGTGGCGCGGCTCGAGGCGCAGGTCGGCCGCCTGCGGGCCCAGCACGTGCAGCAGGACGAGAACGAGGAGCAGCTGAAACAGGACCGACGGCGGCTGCAGAGAGAGGCGAGGGAGGCGCTGAATCGCGTGGAGGAACTAGAGACGGAGAACAAACACCTCACCAAGCGGCTCGACAAGCTCAAAAACGCCAAGTCCGCGCTGCTCAAGGACCTGTGA
- Protein Sequence
- MGNKSELATPENTDEESGEAFTDGDFGDSDDEATVVERTPDSKLPVVETVNGEIVGNAKEKLANGHADSGSEGEKVEVDGRRDSHCSTSSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGGRLAALSPAAHSPRRASEDSDDVLGVKDLRHELKEVEEKFRKAMILTAQLDNDKAALGYRLELLADRLEELHEEHAQLQREHRDRCSAHERLRREHEALERELTRARDAVRARDSAAAAAGFAFVDAAAAPDAPAAGESHGSVPPLALVSHASERLLDDAGEGTLDVRLQNLVSSKQALEGEVRKLKLQLNDERAARQNGAASHHDREHESELETLRKAVSEAKGRAARAEAEAALQAAAVARLEAQVGRLRAQHVQQDENEEQLKQDRRRLQREAREALNRVEELETENKHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00164385;
- 90% Identity
- iTF_01217512; iTF_00164385; iTF_00933774; iTF_00403825; iTF_01178582;
- 80% Identity
- -