Csei005844.1
Basic Information
- Insect
- Cyaniris semiargus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905187585.1
- Location
- LR994557.1:14886576-14897842[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-70 5e-66 223.5 24.3 1 297 103 385 103 388 0.87 2 2 1 2.5e+04 -6.4 13.8 1 46 384 428 384 447 0.67
Sequence Information
- Coding Sequence
- ATGGGCAACAAATCGGAACTCGCAACCCCCGAAAATACGGACGAGGAGAGCGGGGAGGCCTTCACTGACGGCGACTTCGGCGACTCCGACGACGACACCACCGTCGTCGAACGGAGCCCGGACTCCAAGCTGCCCGTTGTCGAGACCGTCAACGGCGAAATTGTGGACGATGCCAAAGAAAAGCTAGCGAATGGACACGCGGATCCGGAGAGCAGCGAGGGCGAGAAGGTGGAGGTGGACGGACGGCGGGACTCACACTGCAGCACCAGCTCCATAGTGGGCATCCTCGGGGATCAACAGAACCATGCGGAACAGCGTCTGGCGGCGCGGCGCGCGGCGCGGGCGGAGGCGCGCGAGATCCGCATGCGGGAGCTGGAGCGCCAGCAGCGCGAGCAGGAGGACCACGCCGACAAGGCCTACGACATGTACGCAGAGACAGTAGGCAGACGGGCGGGCGGGCGGCTCGCGGCGCTCAGCCCCGCCGCGCACTCCCCGCGCCGCGCCTCCGAGGACTCCGACGATGTGCTCGGCGTCAAGGACCTCCGGCACGAGCTGAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTCACCGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCGGCTCGAGCTGCTGGCCGACCGCCTGGAGGAGCTGCACGAGGAGCACGCGCAGCTGCAGCGCGAGCACCGCGACCGCTGTTCCGCGCACGAGCGCCTGCGCCGCGAGCACGAGGCGCTGGAGCGGGAGCTGGCTCGCGCGCGGGACGCCGTGCGGGCGCGCGACTCCGCCGCCGCCGCCGCCGGGTTCGCCTTCGTGGACGCCGCCGCCGCGCCCGACGCGCCTGCGTCCGGCGAGTCGCACGGCTCCGTGCCGCCGCTCGCGCTCGTCTCGCACGCTTCCGAGCGCCTGCTCGACGACGCCGGCGAGGGCACGCTAGATGTCCGATTACAAAACTTGGTAAGCTCGAAGCAGGCGCTGGAGGGCGAGGTGCGGAAACTGAAGCTGCAGCTAAACGACGAGCGCGCGGCGCGGCAGAACGGCGCCGCCTCACATCACGACCGCGAGCATGAGAGCGAGCTGGAGACACTCCGCAAGGCGGTATCTGAGGCGAAGGGTCGAGCGGCGCGCGCGGAGGCGGAGGCGGCGCTGCAGGCGGCGGCGGTGGCGCGGCTCGAGGCGCAGGTGGGCCGCCTGCGCGCGCAGCACGTGCAGCAGGACGAAAACGAGGAGCAACTCAAACAGGAGCGACGACGGCTGCAGAGAGAGGCTCGGGAGGCGCTGAATCGCGTGGAGGAACTGGAGACGGAGAACAAACACCTCACCAAGCGACTCGACAAGCTCAAAAACGCCAAGTCCGCGCTGCTCAAGGATCTGTGA
- Protein Sequence
- MGNKSELATPENTDEESGEAFTDGDFGDSDDDTTVVERSPDSKLPVVETVNGEIVDDAKEKLANGHADPESSEGEKVEVDGRRDSHCSTSSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGGRLAALSPAAHSPRRASEDSDDVLGVKDLRHELKEVEEKFRKAMILTAQLDNDKAALGYRLELLADRLEELHEEHAQLQREHRDRCSAHERLRREHEALERELARARDAVRARDSAAAAAGFAFVDAAAAPDAPASGESHGSVPPLALVSHASERLLDDAGEGTLDVRLQNLVSSKQALEGEVRKLKLQLNDERAARQNGAASHHDREHESELETLRKAVSEAKGRAARAEAEAALQAAAVARLEAQVGRLRAQHVQQDENEEQLKQERRRLQREAREALNRVEELETENKHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00164385;
- 90% Identity
- iTF_00405927;
- 80% Identity
- -