Lcor017053.1
Basic Information
- Insect
- Lysandra coridon
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905220515.1
- Location
- HG992081.1:2224381-2231439[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-70 3.1e-66 224.3 24.0 1 297 59 341 59 344 0.87 2 2 1 2.8e+04 -6.7 15.6 3 166 342 402 340 417 0.51
Sequence Information
- Coding Sequence
- ATGGCTTTGGCGTTGGAAGCGTCATCACCGGAGCTCGTGCTACGCGCCGCAGCGACGCTGTTGTTGCTCTATACGTACAGCCGCCTACTGCCGTCCGGTTGCAGCTACACCCAGTATGCTAGTGCGATTCTATGTGAATACCACTTCGATCCGCCTGCTAAGACCCAAGAGCCGGCGGAACAGCGTCTGGCGGCGCGGCGTGCGGCGCGGGCGGAGGCGCGCGAGATCCGCATGCGGGAGCTGGAGCGGCAGCAGCGCGAGCAGGAGGACCACGCCGACAAAGCCTACGACATGTACGCAGAGACAGTAGGCAGACGGGCGGGCGGGCGGCTCGCGGCGCTCAGCCCCGCCGCGCACTCCCCGCGCCGCGCCTCCGAGGACTCCGACGACGTGCTCGGCGTCAAGGACCTCCGGCACGAGCTGAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTCACCGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCGGCTCGAGCTGCTGGCCGACCGCTTGGAGGAGCTGCACGAGGAGCACGCGCAGCTGCAGCGCGAGCACCGCGACCGCTGCTCCGCGCACGAGCGCCTGCGACGCGAGCACGAGGCGCTGGAGCGGGAGCTGGCGCGCGCGCGGGACGCCGTGCGGGCGCGCGACTCCGCCGCCGCTGCCGCCGGGTTCGCCTTCGTGGACGCCGCCGCCGCGCCCGACGCGCCCGCGTCCGGGGAGTCGCACGGCTCCGTGCCGCCACTCGCGCTCGTCTCGCACGCCTCCGAGCGCCTGCTCGACGACGCCGGCGAGGGCACGCTAGATGTCCGATTACAAAACTTGGTAAGCTCGAAGCAGGCGCTGGAGGGCGAGGTGCGGAAACTGAAGTTGCAGCTGAACGACGAGCGCGCGGCGCGGCAGAACGGCGCCGCCTCACATCACGACCGCGAGCATGAGAGCGAGCTGGAGACACTCCGCAAGGCGGTATCTGAGACGAAGGGTCGGGCGGCGCGAGCGGAGGCGGAGGCGGCGCTGCAGGCGGCGGCGGTGGCGCGGCTCGAGGCGCAGGTGGGCCGCCTGCGCGCGCAGCACGTGCAGCAGGACGAAAACGAGGAGCAGTTGAAGCAGGAGCGACGACGGCTGCAGAGAGAGGCTCGGGAGGCGCTGAATCGCGTTGAGGAACTGGAGACGGAGAATAAACACCTCACCAAGCGGCTCGACAAGCTCAAAAACGCCAAGTCCGCGCTGCTCAAGGACCTGTGA
- Protein Sequence
- MALALEASSPELVLRAAATLLLLYTYSRLLPSGCSYTQYASAILCEYHFDPPAKTQEPAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGGRLAALSPAAHSPRRASEDSDDVLGVKDLRHELKEVEEKFRKAMILTAQLDNDKAALGYRLELLADRLEELHEEHAQLQREHRDRCSAHERLRREHEALERELARARDAVRARDSAAAAAGFAFVDAAAAPDAPASGESHGSVPPLALVSHASERLLDDAGEGTLDVRLQNLVSSKQALEGEVRKLKLQLNDERAARQNGAASHHDREHESELETLRKAVSETKGRAARAEAEAALQAAAVARLEAQVGRLRAQHVQQDENEEQLKQERRRLQREAREALNRVEELETENKHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00164385;
- 90% Identity
- -
- 80% Identity
- -