Pari023499.1
Basic Information
- Insect
- Phengaris arion
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963565745.1
- Location
- OY751442.1:3953561-3962694[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-71 5.6e-67 227.4 21.4 1 297 103 385 103 388 0.88 2 2 0.55 2.4e+04 -4.5 12.9 1 158 384 438 384 457 0.54
Sequence Information
- Coding Sequence
- ATGGGGATTAAATCGGAACTCGCCACCCCCGACAACACGGACGAGGAGAGCGGGGAAGCCTTCACCGACGGCGACTTCGGCGACTCGGACGACGACACTACCATCGTCGAACGTAGTCCGGACTCCAAGCTGCCTGTTGCTGAGACTGTCAACCCAGAGTTTGTAGTCAATGCCAAAGAAAAGATAGTGAATGGACACGCGGATTCCGAGAGCAGCGAGGGGGAGAAAGTTGAGGTGGACGGACGGCGGGATTCGCACTGCAGCACAAGCTCCATCGTCGGCATACTCGGCGACCAGCAAAATCATGCGGAGCAGCGGttggcggcgcggcgcgcggcgcgtgcGGAGGCGCGCGAGATCCGCATGCGCGAGCTGGAGCGCCAGCAGCGCGAGCAGGAGGACCACGCCGACAAGGCCTACGACATGTACGCAGAGACGGTGGGCCGACGGGCGGGCGGGCGTCTGGCGACTCTCAGCCCCGCCGCGCACTCCCCGCGCCGCGCCTCTGAAGACTCCGACGACGTGCTCGGCGTCAAGGACCTCCGGCACGAGCTCAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTCACTGCGCAGCTGGACAACGACAAGGCCGCGCTGGGCTACCGGCTCGAGCTGCTGGCCGACCGCCTGGAGGAGCTGCACGAGGAGCACGCGCAGCTGCAGCGCGAGCACCGCGACCGCTGCTCCGCGCACGAGCGGCTGCGGCGCGAGCACGAGGCGCTGGAGCGCGAGCTGGCGCGGGCGCGAGACGCAATACGCGCGCGCGactccgccgccgccgctgccgGCTTTGCGTTCGTagacgccgccgccgcgcccgaCGCTCCCGCGCCCGGCCAGCCACACGGTTCCGTGCCGCCGCTCGCACTCGTCTCGCACGCATCCGAGCGCCTGCTCGACGACGCCGGCGAGGGCACGCTAGATGTCCGATTACAAAACTTGGTAAGCTCGAAGCAGGCGCTGGAGGGCGAGGTGCGCAAGCTGAAGCTGCAGCTCAACGACGAGCGCGCGGCGCGGCAGAACGGCGCCGCCTCGCACCACGACCGCGAGCACGAGACCGAACTGGAGACGCTGCGCAAAGCGGTGTCAGAGGCAAAGGCGCGTGCGGCGCGCGCGGAGGCGGAGGCGGCCCTACAGGCAGCGGCGGTGGCGCGGCTGGAGGCGCAGGTGGGCCGCCTGCGCGCGCAACACCTGCAGCAGGACGAGAACGAGGAACAGCTCAAGCAGGAGCGCCGCCGGCTGCAGCGTGAGGCGCGGGAGGCGCTCAACCGCGTGGAGGAGCTGGAGACTGAGAACAGTCATCTCACCAAGCGGCTCGACAAGCTCAAGAACGCTAAGTCTGCGCTGCTCAAGGACCTGTGA
- Protein Sequence
- MGIKSELATPDNTDEESGEAFTDGDFGDSDDDTTIVERSPDSKLPVAETVNPEFVVNAKEKIVNGHADSESSEGEKVEVDGRRDSHCSTSSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGGRLATLSPAAHSPRRASEDSDDVLGVKDLRHELKEVEEKFRKAMILTAQLDNDKAALGYRLELLADRLEELHEEHAQLQREHRDRCSAHERLRREHEALERELARARDAIRARDSAAAAAGFAFVDAAAAPDAPAPGQPHGSVPPLALVSHASERLLDDAGEGTLDVRLQNLVSSKQALEGEVRKLKLQLNDERAARQNGAASHHDREHETELETLRKAVSEAKARAARAEAEAALQAAAVARLEAQVGRLRAQHLQQDENEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00164385;
- 90% Identity
- iTF_00405927;
- 80% Identity
- -