Abis022419.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Argynnis bischoffii
Gene Symbol
-
Assembly
GCA_033884665.1
Location
CM066636.1:1021283-1023553[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 6.9e-06 0.00058 20.8 5.6 1 23 6 29 6 29 0.95
2 19 0.00061 0.052 14.7 0.3 2 23 35 57 34 57 0.95
3 19 1.9e-05 0.0016 19.4 0.3 2 23 66 88 66 88 0.97
4 19 4.9e-06 0.00041 21.3 2.1 2 23 97 119 96 119 0.95
5 19 5.2e-05 0.0044 18.1 1.9 2 23 127 149 127 149 0.96
6 19 1.3e-06 0.00011 23.1 0.7 2 23 157 179 156 179 0.95
7 19 1.2e-06 0.0001 23.2 1.5 1 23 185 208 185 208 0.98
8 19 0.0002 0.017 16.2 0.4 1 23 238 261 238 261 0.96
9 19 0.0075 0.64 11.3 0.7 1 23 292 315 292 315 0.96
10 19 1.6 1.4e+02 3.9 1.4 2 21 323 342 322 343 0.92
11 19 0.0072 0.6 11.3 1.8 2 23 352 374 352 374 0.95
12 19 0.24 20 6.6 8.0 1 23 396 419 396 419 0.96
13 19 0.0017 0.15 13.3 1.8 2 23 426 448 425 448 0.96
14 19 3e-05 0.0025 18.8 2.2 2 23 455 477 454 477 0.94
15 19 0.007 0.59 11.4 2.2 1 23 483 506 483 506 0.97
16 19 0.058 4.9 8.5 4.1 2 23 514 536 514 536 0.95
17 19 0.0012 0.098 13.8 0.4 1 23 543 566 543 566 0.96
18 19 0.011 0.93 10.7 1.4 1 21 573 593 573 596 0.88
19 19 0.016 1.4 10.2 2.7 3 23 608 629 607 629 0.91

Sequence Information

Coding Sequence
ATGTCGAATCAAGATTACGTATGCGACCACTGCAGTCGCTCTTTTACTAGAAAATACAATCTTCAGACGCATATCGAAAACTGTCATTTAAATTCATCATGTTATTGTGAAATTTGTGATCAAAGATTTGGTAGTCCAGCCGGTTTGCAACTCCATCTATCCCGGGGCCATAATAGATTTGGGCAGGGCTTACCGGAATGTGACTTGTGTGGGAGAATCTTTACTAGAAAACAGAACATCAATTCTCACATGATAACAGTCCATTTACAAGGTGGAAGACAGGATATACGCTGTACCATATGCAGTAAAACTTTCACAACAGAACGTAATTTAAAACGGCACACAAATCAGTTGCACACACCTGGTGTGGAATATCCAACATGCAATGAATGCCATCGTAGTTTTAAAGGGAAACAATCTCTTATAGCTCATATTCAATCTAACCATGCTAACTTTAAAGGTTTAATAAAATGTCCCCTTTGTGATAAAGTTTACACGAATAATAGGAATTTAAAACGTCACGTGGAAAGGCAACATGGGGAAAAGGAAGAATACAGGTGTGATGTTTGTCCAAAAGTATACACGTCCAATCAAAGTTTAAGACGACATACGAAAACTCAGCATTCTAATGAATTGGTCAATTCAGACCTTTATGCCTTCTACCATAACACTTGTgcaaatgaaaattatacagAGCCTTACAGATTCTTATTTTCTTGCGATTTGTGCAACATGTCGTTTGAAAGCGAGCCCAATTTACGTCAGCATACCAAACTAGATCATTCTTTCCAAGATTTCTACGATTACTGCAAACGTACTCTGCTGAAAACTTGGAAAGTCCCTCAGAAGGAGGAGAAGCAAAAGTTTTTGTTCTACAATTGCGAGTTTTGCATCAACGCTTTCTCAAATGTTTACGATCTAAAAGACCATATGAGGTCGTTCCACGATAAGGAATACAGTCTGTCCACTTGCAATGTGTGTTTCAATAAGTTCTACAGTAAACAGACCATGTTTgagcataaaaaaatatgtattccgCCAGAAAACGTGAACAGCTGCAGCCACTGCGATAAACTATTCACTGATATCTCCAGTTTAGAATTCCACTTACGTATCTTCCATCCTCAAGCCCAAATTGCAGATTCTAATGTATCATCTACTAATAAAGAGGATTTGGACTCTTCCCACAAATGTCGACATTGTGAAAGAATCTATTACAGTGACAGATCCCTAAAACAccacataaaattaaaacacacgACCGATGAAGCTGttaaatgtcaattttgttCGAAAATCTGcagcaataaatattatttggcatCTCACGTAAAGATCGTCCATAATAACGATTCGTGGTCCAAATGCGATTACTGTGACAAGCAGTTTAAGTCCAAAAGGAATATACGAAGGCATATAGAGTACACCCATCTAGGAATGCAAAGATATAAGTGTATTGAATGTGAGACGTTGTTTAAAGAGAAGAGAAGCCTTCGGAAGCATGTTAGGACGAAACATCCAAATTCTACACTCTTCCCACAATGTCATATTTGTGAGAAACGTTTTGAATCAGCAAAATCTTGCAAAATTCACCTGAAATTAATACACTCTTTTAACATGAATACACATCCATGTGATCTATGTTCTGTCTCTTTCACATCAGTGGAAGCTCTCAAAATCCATCTTTCAACGAAACATTTGGCTGAAGATGAAATTTACAAGTGCAAAGAATGCAATTTAGTATTCAAAGGCCAAGATAAATTTGATAGTCATAACGAAGAGTTTCATATCAATCTACCCTCTCAAAAAACGCTACCCCGTTGCATAATCTGTATGAAAGATTTTAGCACACGAAAAACTTTGAAACGCCATATAAAGAAGTTTCACGACGATTTTAATGTGGACGAACTCGCAACTTATGGAACTCGAAAACGCATATTTACTATTGAATGCGGCGAATGCATAAAGAACTTCAATGACGAATTTTACATTGGTGTGTaccaaaaaattaaacatttaagaGATTCGACCATTTTCAAATGTGAATATTGCAAAAACTCATACAATTGTCTGGAGTTTGCTATACAGAGGTATAAACAGACGTTTGACGTGTCGAAAGCTAAGCTGTATTTGAGCGAACTTTGCACAGCGGAAATGAGTGAGGAATCTCAATGTAATGAAAGTATGGAGCCAGAAAGTACCACAAGTGATGTTAAATTGGAACCTATGGAGGTGTCTGATTATGTAAAAATAGAGCCTATGTCACCATAG
Protein Sequence
MSNQDYVCDHCSRSFTRKYNLQTHIENCHLNSSCYCEICDQRFGSPAGLQLHLSRGHNRFGQGLPECDLCGRIFTRKQNINSHMITVHLQGGRQDIRCTICSKTFTTERNLKRHTNQLHTPGVEYPTCNECHRSFKGKQSLIAHIQSNHANFKGLIKCPLCDKVYTNNRNLKRHVERQHGEKEEYRCDVCPKVYTSNQSLRRHTKTQHSNELVNSDLYAFYHNTCANENYTEPYRFLFSCDLCNMSFESEPNLRQHTKLDHSFQDFYDYCKRTLLKTWKVPQKEEKQKFLFYNCEFCINAFSNVYDLKDHMRSFHDKEYSLSTCNVCFNKFYSKQTMFEHKKICIPPENVNSCSHCDKLFTDISSLEFHLRIFHPQAQIADSNVSSTNKEDLDSSHKCRHCERIYYSDRSLKHHIKLKHTTDEAVKCQFCSKICSNKYYLASHVKIVHNNDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTLFPQCHICEKRFESAKSCKIHLKLIHSFNMNTHPCDLCSVSFTSVEALKIHLSTKHLAEDEIYKCKECNLVFKGQDKFDSHNEEFHINLPSQKTLPRCIICMKDFSTRKTLKRHIKKFHDDFNVDELATYGTRKRIFTIECGECIKNFNDEFYIGVYQKIKHLRDSTIFKCEYCKNSYNCLEFAIQRYKQTFDVSKAKLYLSELCTAEMSEESQCNESMEPESTTSDVKLEPMEVSDYVKIEPMSP