Hcon008433.1
Basic Information
- Insect
- Heliconius congener
- Gene Symbol
- -
- Assembly
- GCA_018230605.1
- Location
- DWAO01006563.1:6941-9202[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 8.2e-06 0.00091 20.6 5.8 1 23 6 29 6 29 0.95 2 20 0.00093 0.1 14.1 0.4 2 23 35 57 34 57 0.95 3 20 1.8e-05 0.002 19.5 0.3 2 23 66 88 66 88 0.97 4 20 5.2e-05 0.0058 18.0 1.4 2 23 97 119 96 119 0.92 5 20 2.8e-05 0.0031 18.9 0.7 2 23 127 149 127 149 0.97 6 20 1.2e-06 0.00013 23.2 0.6 2 23 157 179 156 179 0.95 7 20 2.8e-06 0.00031 22.0 1.0 1 23 185 208 185 208 0.98 8 20 0.00045 0.05 15.1 0.7 1 23 238 261 238 261 0.96 9 20 0.0057 0.64 11.6 0.5 1 23 292 315 292 315 0.96 10 20 1.3 1.4e+02 4.2 0.9 2 21 323 342 322 343 0.92 11 20 0.0034 0.37 12.3 1.5 2 23 352 374 352 374 0.96 12 20 0.0015 0.17 13.4 5.9 1 23 396 419 396 419 0.97 13 20 0.0001 0.011 17.1 1.6 2 23 426 448 425 448 0.97 14 20 2.9e-05 0.0032 18.8 2.2 2 23 455 477 454 477 0.94 15 20 0.0068 0.75 11.4 2.2 1 23 483 506 483 506 0.97 16 20 0.073 8.1 8.1 4.4 2 23 514 536 514 536 0.95 17 20 0.00047 0.052 15.0 0.3 1 23 543 566 543 566 0.96 18 20 0.013 1.4 10.5 1.0 1 20 573 592 573 596 0.88 19 20 0.00076 0.085 14.4 3.0 3 23 608 629 607 629 0.93 20 20 3.9 4.3e+02 2.7 0.1 2 12 650 660 649 664 0.84
Sequence Information
- Coding Sequence
- ATGTCCAGCCAGGATTATGTCTGTGACCACTGTAGTCGCACATTCACACGAAAATATAATCTACAAACACACATAGAAAACTGTCATTTAAATTCATCATGTTATTGTGACATATGCAATCAAAGATTTGGGAGTCCTGCCGGATTACAATTGCACTTGTCAAGAGGTCACAATCGGTTTGGCCAAGGTCTCCCAGAATGCGACCTCTGCGGCAGAATATTTactagaaaacaaaatatcaactCTCACATGATTACTGTTCATTTACAAGGTGGCAGGCAGGATATAAGATGtgctatttgttataaaacttttacaacAGAACGAAATTTAAAACGGCATACTACTCAGCTACATGCGCCTGGTGTGGAATATCCAACTTGTAATGAGTGCCAACGTAGTTTTAGAGGAAAACAGTCTTTGATATCTCATATACAGACAGCAcattctattaattataagttgATTAAGTGTCCATTATGTGATAAagtatattctaataataggAATTTAAAACGCCATGTTGAGCGGCAACATGGTGAAAAGGAAGAGTTCAAGTGTGACATATGTCCGAAAATTTACACTTCTAATCAGAGTTTAAGAAGACATGCTAAAACACAACATTCTaaagaaattttcaatatggatgtttatacatattgtCATAACTCCAATTCAAACGAAAACTGTATAGAATCTTACAAGTTTTTGTTTTCCTGCGATTTGTGTCAAATGACATTTGAAAGTGAGCCCAATTTGCGACAGCACACCAAGTTGAATCACTCGTTCCAAGAATTCTACAATTATTGTAGGAAAACTCTTCTGAAAACGTGGAGGGTATCCCAAAATAGTAATAAGCATAGACTTAGGTATTACAACTGTGAATTTTGCATCAATGCTTTTTCGACAGTTTACGATTTAAAAGATCACATGCGGTCTCTTCATGATAAAGAGTACAGTTTATCGACTTGCAATGTGTGTTTTAATAAGTTCTACAGCAAAGAAACGAtgtatgaacataaaaaaatatgtctacCCCCAGAAAATGTAAACAGTTGTAGCCATtgcgataaattatttacagacGTGTCGAGCTTAGAGTTTCACATAAGAATTTTTCATCCTCAAGCCCAAATCGCTGATTCCAATATATCATCAACTAATATCGATGATATTGATACATCTTACAGATGCTTACACTGTGACAGAATATACTACAGCGAGAGATCGCTAAAACATCacatgaaattaaaacatacgaCTGATGAAGCTGTAAAATGCCAATATTGCTCCAAAATATGCAGCAATAAGTACTATTTAGCATCACATATTAAGATAGTTCATAACAACGATTCTTGGTCTAAATGTGACTATTGTGATAAGCAATTCAAATCTAAGAGAAATATACGTAGGCACATAGAATATACACATTTGGGCATGCAAAGATATAAGTGTATCGAATGCGAGACACTTTTTAAAGAGAAAAGAAGTCTTCGTAAGCATGTCAGGACTAAACATCCAAATTCCACGTTGTTTCCTCAGTGTCACATATGCGAGAAACGTTTTGAATCAGCAAAATCTTGCAAAATTCACCTAAAATTGCTGCATTCTTTCAATATGAACACCCATCCTTGTGATTTATGCTCGGTGTCATTCACTTCGTTGGAAGCCTTAAAGATTCATTTAGCGACTAAACATTTGGCAGAAGATGAGATTTATAAGTGCAAAGAATGTAATTTGGTATTTAAAGGTCAGGAGAAATTTGATGTCCATAACGAGGAGTTCCACCTCAATCTACCCACACAGAAAACTTTACCACGATgcataatatgtacaaaagATTTTAGCACGCGTAAGACATTGAAACGCCATATTAAGAAGTTTCACGAAGAATTCAACGTAGATGAACTGGCCACATACGGTTCAAGGAAACGAGTACTTTCTATCGAATGTAACGAGTGCctaaagaattttaatgatGATTATCATATTGGAGTATACGAGAAGTTGAAAAATATGCGCGactctataatttttaaatgcgaATTCTGCAAAAGTTCCTATAATAGCCTAGAATTTGCTATACAAAGGTATAGGCAGACATTTGATGTGTCCAAATCGAAGTTATACCTGTCTGAATTGTGTACTACAGAAATGAGCGATGATTCTCAATATAATGATACTATGGAACCGGAAAGTACTACGTATGATATAAAGACGGAACCGTttttggatataaaaatagagcCAAGTTCgccataa
- Protein Sequence
- MSSQDYVCDHCSRTFTRKYNLQTHIENCHLNSSCYCDICNQRFGSPAGLQLHLSRGHNRFGQGLPECDLCGRIFTRKQNINSHMITVHLQGGRQDIRCAICYKTFTTERNLKRHTTQLHAPGVEYPTCNECQRSFRGKQSLISHIQTAHSINYKLIKCPLCDKVYSNNRNLKRHVERQHGEKEEFKCDICPKIYTSNQSLRRHAKTQHSKEIFNMDVYTYCHNSNSNENCIESYKFLFSCDLCQMTFESEPNLRQHTKLNHSFQEFYNYCRKTLLKTWRVSQNSNKHRLRYYNCEFCINAFSTVYDLKDHMRSLHDKEYSLSTCNVCFNKFYSKETMYEHKKICLPPENVNSCSHCDKLFTDVSSLEFHIRIFHPQAQIADSNISSTNIDDIDTSYRCLHCDRIYYSERSLKHHMKLKHTTDEAVKCQYCSKICSNKYYLASHIKIVHNNDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTLFPQCHICEKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFTSLEALKIHLATKHLAEDEIYKCKECNLVFKGQEKFDVHNEEFHLNLPTQKTLPRCIICTKDFSTRKTLKRHIKKFHEEFNVDELATYGSRKRVLSIECNECLKNFNDDYHIGVYEKLKNMRDSIIFKCEFCKSSYNSLEFAIQRYRQTFDVSKSKLYLSELCTTEMSDDSQYNDTMEPESTTYDIKTEPFLDIKIEPSSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00160041;
- 90% Identity
- iTF_00458236;
- 80% Identity
- iTF_00778900;