Basic Information

Insect: Dione juno
Gene Symbol: -
Assembly: GCA_037127375.1
Location: JAXRJS010000107.1:585790-588033[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.13 1.8e+03 -0.2 0.2 21 49 2 30 1 33 0.85

2 11 0.0003 4.3 8.2 0.1 23 48 94 119 90 123 0.84

3 11 1e-05 0.15 12.9 0.2 26 50 157 181 136 185 0.89

4 11 0.0039 56 4.6 0.4 26 48 186 208 177 211 0.88

5 11 0.0037 52 4.7 0.0 26 48 239 261 236 265 0.93

6 11 0.0013 19 6.1 0.3 26 50 396 420 391 424 0.90

7 11 0.00014 2 9.3 0.3 26 49 454 477 447 480 0.88

8 11 0.014 2.1e+02 2.8 0.2 26 48 483 505 478 509 0.86

9 11 0.56 7.9e+03 -2.3 0.0 27 48 514 535 508 538 0.86

10 11 0.033 4.7e+02 1.7 0.0 27 52 544 569 535 571 0.86

11 11 0.19 2.7e+03 -0.8 0.1 27 45 607 625 602 629 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.13	1.8e+03	-0.2	0.2	21	49	2	30	1	33	0.85
2	11	0.0003	4.3	8.2	0.1	23	48	94	119	90	123	0.84
3	11	1e-05	0.15	12.9	0.2	26	50	157	181	136	185	0.89
4	11	0.0039	56	4.6	0.4	26	48	186	208	177	211	0.88
5	11	0.0037	52	4.7	0.0	26	48	239	261	236	265	0.93
6	11	0.0013	19	6.1	0.3	26	50	396	420	391	424	0.90
7	11	0.00014	2	9.3	0.3	26	49	454	477	447	480	0.88
8	11	0.014	2.1e+02	2.8	0.2	26	48	483	505	478	509	0.86
9	11	0.56	7.9e+03	-2.3	0.0	27	48	514	535	508	538	0.86
10	11	0.033	4.7e+02	1.7	0.0	27	52	544	569	535	571	0.86
11	11	0.19	2.7e+03	-0.8	0.1	27	45	607	625	602	629	0.84

Sequence Information

Coding Sequence: ATGTCCAGTCAAGATTTTGTCTGCGATCATTGCAGTCGTTCGTTCAcaagaaaatataatctacAAACCCATATAGAAAACTGCCATTTAAATTCATCATGCTATTGCGAAATTTGTGATCAGAGATTCGGAAGTCCAGCTGGTTTACAACTCCATCTATCAAGAGGCCATAATCGTTTCGGCCAAGGTTTGCCAGAATGCGACCTCTGCGGCAGAATATTTACTAGAAAACAGAACATAACCTCTCACATGATCACCGTCCATTTGCAAGGTGGCAGACAGGATATAAGATGttctatatgtaataaaactttCACAACTGAACGCAATTTGAAGCGGCACACCAATCAGCTCCACGCTCCCGGTGTGGAATATCCAACTTGTAATGAATGCCAACGAAGCTTCAGAGGTAAGCAATCGCTCATATCTCATATACAAACAACgcattcaaataatttcaaattaatcaaATGTCCGCTATGTGATAAGGCATATTCTAATAATAGGAATTTGAAACGCCATGTGGAACGGCAACATGGAGAAAAAGAAGAATTCAAGTGCGACATTTGTCCCAAGGTCTACACTTCCAATCAGAGCTTACGCCGACATGCGAAAGCTCAGCATTCTAAGGAAATGTTCCACATGGATCTGTATGGTTTCTGCCATAATTCTAGTTCCAATGATCACTACACGGAGCCCTATAAGTTTTTGTTCACATGTGATTTGTGTCAAATGACGTTCGAAAGTGAACCCAATTTGCGACAGCACACAAAACTCAATCACTCCTTCCAAGACTTCTACAATTATTGTAGGAGAACCCTCCTGAAAACGTGGAGAGTGAACCAAAACGGTGATACACAAAAGCTTTTGTATTACAATTGTGAATTCTGCATCAATTCCTTCTCAACGGTGTACGATTTGAAAGATCATATGAGATCTCTCCATGACAAGGAGTACAGCTTGTCCGCTTGTAACGTGTGCTTCAACAAGTTCTACAGCAAGGAGACCATGtatgaacataaaaatatatgcctGCCGCCGGACAATGTGAACAATTGCAGCCACTGCGATAAACTGTTTACAGATGTCTCGAGTCTAGAGTTCCACATACGAATTTTCCATCCCCAAGCCCAAATCGCTGATCCCAATATTTCATCAACTAATTTCGATGATGGGGACTCCTACAGATGCCCGCACTGCGATAGAATTTATTACAGCGACAGATCCTTGAAACACCATATGAAACTGAAGCACACCACCGACGAAGCTGTTAAATGTCAGTTTTGCTTCAAAATATGCagcaataaatactatttagcaTCTCACATCAAGATTGTCCACAATAATGACGCATGGTCGAAATGCAATTATTGTGATAAGCAGTTCAAATCTAAAAGGAACATACGGAGGCACATAGAGTACACACATTTGGGCATGCAAAGATATAAGTGTATAGAATGTGAAACTCTCTTTAAAGAGAAGAGAAGTCTCCGTAAGCACGTCAGGACCAAGCATCCAAACTCCACGTTATTCCCACAGTGTCATATTTGTGAGAAACGCTTCGAATCTGCGAAATCTTGTAAGATTCACCTCAAATTGCTGCATTCGTTCAATATGAACACGCATCCGTGCGATTTGTGTTCCGTTTCATTCACATCCGTCGAAGCTTTGAAGATCCATCTCTCAACGAAACATTTGGCCAAAGATGAGATCTACAAATGCAAGGAGTGCAATCTGGTGTTCAAAGGCCAAGAGAAATTCGACGTCCACAACGAGGAGTTCCACCTGAACCTGCCCATACAAAAGACCCTGCCGCGTTgtgttatttgtatgaaagATTTTAGCACGAGGAAAACGTTGAAACGCCATATCAAGAAGTTCCACGACGAGTTCAATGTGGACGAGCTGGCGACCTACGGGTCGAGGAAGCGCGCGCTCTCAATCGAATGCAGCGAGTGTTTGAAGAGCTTCAACGACGACTATCATATtggtaattatgaaaaaactaaacatatacgcgatattataatctttaagTGCGAATCTTGCGATAGCTCGTACAATAGCCTAGAGTTTGCTATACAGCGGTATAGGCTAACGTTTGACGTGTCCAAAGCCAAGCTGTACTTGTCTGAGCTGTGCACCGCGGAAATGAGCGAGGACTCTATGGAGCCGGAGAGTACGACGTTTGATATGAAAATAGAAACCGACTTGGACATTAAAGTCGAGCCTAACTCGCCATAA
Protein Sequence: MSSQDFVCDHCSRSFTRKYNLQTHIENCHLNSSCYCEICDQRFGSPAGLQLHLSRGHNRFGQGLPECDLCGRIFTRKQNITSHMITVHLQGGRQDIRCSICNKTFTTERNLKRHTNQLHAPGVEYPTCNECQRSFRGKQSLISHIQTTHSNNFKLIKCPLCDKAYSNNRNLKRHVERQHGEKEEFKCDICPKVYTSNQSLRRHAKAQHSKEMFHMDLYGFCHNSSSNDHYTEPYKFLFTCDLCQMTFESEPNLRQHTKLNHSFQDFYNYCRRTLLKTWRVNQNGDTQKLLYYNCEFCINSFSTVYDLKDHMRSLHDKEYSLSACNVCFNKFYSKETMYEHKNICLPPDNVNNCSHCDKLFTDVSSLEFHIRIFHPQAQIADPNISSTNFDDGDSYRCPHCDRIYYSDRSLKHHMKLKHTTDEAVKCQFCFKICSNKYYLASHIKIVHNNDAWSKCNYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTLFPQCHICEKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFTSVEALKIHLSTKHLAKDEIYKCKECNLVFKGQEKFDVHNEEFHLNLPIQKTLPRCVICMKDFSTRKTLKRHIKKFHDEFNVDELATYGSRKRALSIECSECLKSFNDDYHIGNYEKTKHIRDIIIFKCESCDSSYNSLEFAIQRYRLTFDVSKAKLYLSELCTAEMSEDSMEPESTTFDMKIETDLDIKVEPNSP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00160041;
90% Identity: iTF_00458236;
80% Identity: iTF_00457391;