Bdap003319.1
Basic Information
- Insect
- Brenthis daphne
- Gene Symbol
- -
- Assembly
- GCA_947093115.1
- Location
- OX352473.1:2887941-2890208[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 6.2e-06 0.00047 20.8 5.6 1 23 6 29 6 29 0.95 2 19 0.00055 0.042 14.7 0.3 2 23 35 57 34 57 0.95 3 19 1.7e-05 0.0013 19.5 0.3 2 23 66 88 66 88 0.97 4 19 4.4e-06 0.00034 21.3 2.1 2 23 97 119 96 119 0.95 5 19 4.7e-05 0.0036 18.1 1.9 2 23 127 149 127 149 0.96 6 19 1.2e-06 8.8e-05 23.1 0.7 2 23 157 179 156 179 0.95 7 19 1.1e-06 8.5e-05 23.2 1.5 1 23 185 208 185 208 0.98 8 19 0.0002 0.015 16.1 0.6 1 23 237 260 237 260 0.96 9 19 0.0067 0.51 11.3 0.8 1 23 291 314 291 314 0.96 10 19 1.5 1.2e+02 3.9 2.5 2 21 322 341 321 342 0.92 11 19 0.0065 0.49 11.3 1.8 2 23 351 373 351 373 0.95 12 19 0.085 6.5 7.8 7.7 1 23 395 418 395 418 0.96 13 19 0.00049 0.037 14.9 1.8 2 23 425 447 424 447 0.96 14 19 2.7e-05 0.0021 18.8 2.2 2 23 454 476 453 476 0.94 15 19 0.0063 0.48 11.4 2.2 1 23 482 505 482 505 0.97 16 19 0.067 5.1 8.1 4.4 2 23 513 535 513 535 0.95 17 19 0.0011 0.08 13.8 0.4 1 23 542 565 542 565 0.96 18 19 0.011 0.82 10.6 1.4 1 21 572 592 572 595 0.88 19 19 0.015 1.1 10.2 2.7 3 23 607 628 606 628 0.91
Sequence Information
- Coding Sequence
- ATGTCGAATCAAGATTACGTATGCGACCACTGCAGTCGCTCTTTCACTAGGAAATACAATCTTCAAACACATATAGAAAATTGTCATTTAAATTCATCATGTTATTGTGAAATTTGCGATCAAAGATTTGGAAGTCCAGCTGGTTTGCAGCTCCATCTATCTCGCGGGCATAATAGATTTGGACAGGGCTTACCGGAATGTGACTTGTGTGGAAGAATCTTTACTAGAAAACAGAACATCAACTCTCATATGATAACAGTCCATTTACAAGGTGGAAGACAGGATATACGCTGTACCATATGCAGTAAAACTTTCACAACAGAGCGTAATTTAAAGCGGCACACAAATCAGTTACACACACCCGGTGTGGAGTACCCAACATGCAATGAATGCCATCGCAGTTTTAAAGGGAAACAGTCCCTTATAGCTCACATTCAGTCTAATCATGCTAACTTTAAAGGTCTAATAAAATGTCCCCTTTGTGATAAAGTTTACACGAATAATAGGAATTTGAAACGTCACGTGGAAAGGCAACATGGGGAAAAGGAAGAATACAGGTGTGATGTTTGTCCAAAAGTATACACGTCCAATCAAAGTTTAAGACGACATACGAAAACTCAGCATACTAACGAATTGGCAAATTCAGACCCTTATGCCTTCTACCATAACATTTCCAATGAAAATTATACAGAGCCTTATAGATTCTTATTTTCTTGCGATTTGTGCAACATGTCGTTTGAAAGCGAGCCCAATTTACGACAGCATACCAAACTAAATCACTCTTTCCAAGACTTCTACGATTACTGCAAACGTACTCTGCTAAAAACTTGGAAAGTCTCTGAGAAGGGGGAGAAGCAAAAGTTTTTGTTCTATAATTGCGAGTTCTGTATCAACGCTTTCTCAACTGTTTACGATCTAAAAGACCATATGAGGTCGTTTCACGATAAGGAATACAGTTTGTCTACTTGTAACGTGTGTTTCAACAAATTCTACAGTAAACATACCATGTTTGAGCATAAAAAAATATGTATTCCGCCAGAAAACGTGAATAGCTGTAGTCATTGCGACAAACTATTCACTGATATCTCCAGTTTAGAATTCCACTTACGTATCTTCCATCCTCAAGCCCAAATTGCAGATTCTAATGTATCATCTACTAATAAAGAGGATTTGGAGTCTTCCCACAAATGCCAACATTGTGAAAGAATCTATTACAGTGACAGATCGTTAAAACACCACATAAAATTAAAACACACGACTGATGAAGCTGTTAAATGTCAATTTTGTTCGAAAATCTGCAGCAATAAATATTATTTGGCATCTCACATCAAGATCGTTCATAATAACGATTCGTGGTCCAAATGCGATTACTGCGACAAACAGTTTAAGTCCAAGAGGAATATACGAAGGCATATAGAATATACGCATCTAGGAATGCAAAGATATAAGTGCATTGAATGTGAAACGTTGTTTAAAGAGAAGAGAAGCCTTCGGAAGCATGTTAGGACCAAACACCCAAATTCTACACTCTTCCCACAGTGTCATATTTGTGAAAAACGCTTCGAATCAGCAAAATCTTGCAAAATTCACCTGAAACTACTACACTCTTTTAACATGAACACGCATCCATGTGATCTATGTTCTGTCTCTTTCACATCAGTGGAAGCTCTGAAAATCCATCTTTCAACGAAACATTTGGCTGAAGACGAAATTTACAAGTGCAAAGAATGTAATTTAGTGTTCAAAGGCCAGGAGAAATTTGATAATCATAACGAAGAGTTTCATATCAATCTGCCCTCCCAAAAAACGCTACCCCGTTGCATAATCTGTATGAAAGATTTTAGCACACGAAAAACTTTGAAACGCCATATAAAGAAGTTCCACGAAGATTTTAATGTAGATGAACTCGCAACGTACGGGACTCGAAAACGCATATTTACTATTGAATGCGGCGAATGCATAAAGAACTTCAATGACGAATTTTATATTGGGGTGTACCAAAAAATAAAACATTTAAGAGATTCGACCATTTTCAAATGTGAATATTGCAAAAACTCATACAACTGTCTGGAGTTTGCTATACAGAGGTATAAACAGACGTTTGACGTGTCGAAAGCCAAGCTTTATTTGAGCGAACTTTGCACAGCGGAGATGAGTGAAGAATCTCAGTGTAATGAAAGTATGGAGCCAGAAAGTACCACAAGTGATGTTAAATTGGAACCTATGGAGGTGTCTCATTATGTAAAAATAGAGCCCACGTCACCATAG
- Protein Sequence
- MSNQDYVCDHCSRSFTRKYNLQTHIENCHLNSSCYCEICDQRFGSPAGLQLHLSRGHNRFGQGLPECDLCGRIFTRKQNINSHMITVHLQGGRQDIRCTICSKTFTTERNLKRHTNQLHTPGVEYPTCNECHRSFKGKQSLIAHIQSNHANFKGLIKCPLCDKVYTNNRNLKRHVERQHGEKEEYRCDVCPKVYTSNQSLRRHTKTQHTNELANSDPYAFYHNISNENYTEPYRFLFSCDLCNMSFESEPNLRQHTKLNHSFQDFYDYCKRTLLKTWKVSEKGEKQKFLFYNCEFCINAFSTVYDLKDHMRSFHDKEYSLSTCNVCFNKFYSKHTMFEHKKICIPPENVNSCSHCDKLFTDISSLEFHLRIFHPQAQIADSNVSSTNKEDLESSHKCQHCERIYYSDRSLKHHIKLKHTTDEAVKCQFCSKICSNKYYLASHIKIVHNNDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTLFPQCHICEKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFTSVEALKIHLSTKHLAEDEIYKCKECNLVFKGQEKFDNHNEEFHINLPSQKTLPRCIICMKDFSTRKTLKRHIKKFHEDFNVDELATYGTRKRIFTIECGECIKNFNDEFYIGVYQKIKHLRDSTIFKCEYCKNSYNCLEFAIQRYKQTFDVSKAKLYLSELCTAEMSEESQCNESMEPESTTSDVKLEPMEVSHYVKIEPTSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00160041;
- 90% Identity
- iTF_00248311;
- 80% Identity
- -