Dpha020938.1
Basic Information
- Insect
- Dryadula phaetusa
- Gene Symbol
- -
- Assembly
- GCA_032432895.1
- Location
- JAOYRS010000094.1:164916-167183[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 6.6e-06 0.00051 20.8 5.6 1 23 6 29 6 29 0.95 2 20 0.0006 0.046 14.7 0.3 2 23 35 57 34 57 0.95 3 20 1.7e-05 0.0013 19.5 0.3 2 23 66 88 66 88 0.97 4 20 1.4e-06 0.0001 23.0 2.0 2 23 97 119 96 119 0.95 5 20 7.4e-05 0.0056 17.5 2.9 2 23 127 149 127 149 0.97 6 20 3.1e-05 0.0024 18.7 1.9 2 23 157 179 156 179 0.95 7 20 1.3e-06 0.0001 23.0 1.0 1 23 185 208 185 208 0.98 8 20 0.00029 0.022 15.6 0.7 1 23 241 264 241 264 0.96 9 20 0.0033 0.25 12.3 0.9 1 23 295 318 295 318 0.97 10 20 0.8 61 4.8 1.1 2 21 326 345 325 346 0.92 11 20 0.0036 0.28 12.2 1.5 2 23 355 377 355 377 0.96 12 20 0.006 0.46 11.5 6.0 1 23 399 422 399 422 0.97 13 20 0.00017 0.013 16.4 2.7 2 23 429 451 428 451 0.97 14 20 2.9e-05 0.0022 18.8 2.2 2 23 458 480 457 480 0.94 15 20 0.014 1.1 10.4 3.1 1 23 486 509 486 509 0.97 16 20 0.071 5.5 8.1 4.4 2 23 517 539 517 539 0.95 17 20 0.0011 0.085 13.8 0.4 1 23 546 569 546 569 0.96 18 20 0.091 6.9 7.8 2.3 1 19 576 594 576 599 0.84 19 20 0.016 1.2 10.2 2.7 3 23 611 632 610 632 0.91 20 20 6.4 4.9e+02 2.0 0.2 3 12 654 663 652 667 0.82
Sequence Information
- Coding Sequence
- ATGTCCAGTCAAGATTACGTCTGTGATCACTGTAGTCGTTCCTTCACACGAAAATATAATCTGCAAACCCATATAGaaaattgtcatttaaattCATCATGCTACTGTGATATTTGTGACCAGAGATTTGGATCACCAGCTGGTCTCCAACTCCATTTGTCCAGAGGCCACAACAGATTCGGCCAGGGCCTGCCCGAGTGTGACCTGTGCGGCAGAATATTCACTAGGAAACAGAATATCACGTCTCACATGATAACCGTCCACTTGCAAGGCGGCAGGCAAGATATAAGATGTaacatttgtaataaaactttcaCAACCGAACGGAATTTGAAACGGCATACCAATCAGTTGCACGCGCCTGGCGTGGAATACCCCACGTGCAATGAGTGCCACCGCACGTTCAGAGGCAAACAGTCCCTCATATCCCACATACAGACCACGCACGCAAATAATTTCAAGTTAATCAAGTGTCCGTTGTGTGAAAAAGCCTATTGTAACAATAGGAATCTGAAACGTCATGTTGAACGCCAGCATGGTGAAAGGGAGGAGTTCAGATGTGACATTTGCCCAAAGGTCTACACTTCAAATCAGAGCTTGAGGAGACATGCGAAAACTCAGCATTACAAAGATATATACAACATGACTGAATACAGGTCGTATTCAGTCTGCCACAATTCTAGTTCCAACGAGAACTATACGGAGCCCTACAAATTTCTGTTCACATGCGATTTGTGTCAAATGACGTTTGAAAGTGAGCCCAATTTGCGTCAACACACCAAACTAAATCATACATTTCAAGATTTCTACAATTATTGTAGAAGTGCTCTCTTGAAAACGTGGCGGGTTTCCCAAAGAAATGATAGGCagaagtttttttattacaattgtgaATTTTGCATCAACACCTTTTCCACTGTGTACGATCTGAAGGACCATATGAGGTCTCTTCACGATAAGGAGTACAGTTTATCCACTTGCAACGTTTGCTTCAATAAGTTTTACAGTAAGGAGACCATGTTCGAGCACAAAAAGATATGCTTGCCACCAGAAAACGTGAACAGTTGCAGCCATTGCGACAAGCTGTTTACGGACATATCCAGCTTAGAGTTCCACATACGCATCTTCCACCCCCAAGCCCAAATCGCCGATTCCAATATTACCTCAACTAATTTCCATGATATTGACACGTCGTACAGATGTTTGCACTGTGATAGGATATACTACAGCGATAGGTCTCTAAAACACCACATGAAATTAAAACACTCCACGGATGAGGCGGTGAAATGTCATGTTTGTTCCAAAATCTGCAGCAACAAATATTACTTAGCGTCCCACATTAAAATTGTACATAACAATGATTCTTGGTCGAAATGCGATTACTGCGACAAGCAGTTCAAATCCAAGAGGAACATACGGAGGCACATAGAGTACACGCATTTGGGCATGCAAAGATACAAGTGCATTAAATGCGAGACGCTCTTCAAAGAAAAGAGAAGTCTTCGTAAGCACGTGAGAACCAAACACCCGAACTCAACGTTATTTCCGCAGTGTCATATTTGCGAGAAACGCTTCGAATCGGCGAAGTCTTGCAAAATCCACCTGAAGCTGCTTCATTCGTTCAACATGAACACACACCCGTGCGACCTGTGCTCCGTTTCGTTCACGTCCGTGGAGGCTTTAAAGATACATCTGTCGACCAAACATTTGGCTGAGGACGAGATTTACAAATGCAAAGAGTGCAATATGGTATTCAAAGGTCACGAGAAGTTTGACCTTCATAACGAGGAGTTCCACATCAACACGCCAACACAAAAGACCTTGCCACGATGCATTATATGCATGAAAGACTTCAGTACTAGAAAAACACTGAAACGTCACATCAAAAAGTTCCACGAGGAGTTCAACGTAGACGAGTTAGCGACGTACGGCTCCAGGAAACGGGTGCTCTCTATCGACTGTGGCGAGTGTCTCAAGAGCTTCAACAGCGATTACTATACGGGCATTTACGAAAAGTTGAAACATTTAAGAGATTCCATAATTTTTAAGTGCGAATTCTGCAAAAGCTCGTACAATTGTCTGGAGTTCGCCATCCAGAGGTACAGGCAGACCTTCGACGTGTCCAAAGCGAAGCTGTACCTGTCGGAGCTGTGCACGGCGGAGATGAGCGATGACTCCCAGTACAACGACAACATGGAACCTGAGAGTACGACGCTTGATGTGAAAATGGAAGACTTGGATATAAAAGTCGAACCTAGCTCCCCGTGA
- Protein Sequence
- MSSQDYVCDHCSRSFTRKYNLQTHIENCHLNSSCYCDICDQRFGSPAGLQLHLSRGHNRFGQGLPECDLCGRIFTRKQNITSHMITVHLQGGRQDIRCNICNKTFTTERNLKRHTNQLHAPGVEYPTCNECHRTFRGKQSLISHIQTTHANNFKLIKCPLCEKAYCNNRNLKRHVERQHGEREEFRCDICPKVYTSNQSLRRHAKTQHYKDIYNMTEYRSYSVCHNSSSNENYTEPYKFLFTCDLCQMTFESEPNLRQHTKLNHTFQDFYNYCRSALLKTWRVSQRNDRQKFFYYNCEFCINTFSTVYDLKDHMRSLHDKEYSLSTCNVCFNKFYSKETMFEHKKICLPPENVNSCSHCDKLFTDISSLEFHIRIFHPQAQIADSNITSTNFHDIDTSYRCLHCDRIYYSDRSLKHHMKLKHSTDEAVKCHVCSKICSNKYYLASHIKIVHNNDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIKCETLFKEKRSLRKHVRTKHPNSTLFPQCHICEKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFTSVEALKIHLSTKHLAEDEIYKCKECNMVFKGHEKFDLHNEEFHINTPTQKTLPRCIICMKDFSTRKTLKRHIKKFHEEFNVDELATYGSRKRVLSIDCGECLKSFNSDYYTGIYEKLKHLRDSIIFKCEFCKSSYNCLEFAIQRYRQTFDVSKAKLYLSELCTAEMSDDSQYNDNMEPESTTLDVKMEDLDIKVEPSSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00160041;
- 90% Identity
- -
- 80% Identity
- -