Hcyd018838.1
Basic Information
- Insect
- Heliconius cydno
- Gene Symbol
- -
- Assembly
- GCA_036379175.1
- Location
- FAPN01007341.1:3137-9707[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 7.2e-06 0.00092 20.5 5.8 1 23 7 30 7 30 0.95 2 21 0.00091 0.12 13.9 0.4 2 23 36 58 35 58 0.95 3 21 1.6e-05 0.0021 19.5 0.3 2 23 67 89 67 89 0.97 4 21 8.4e-06 0.0011 20.3 1.3 2 23 98 120 97 120 0.92 5 21 2.4e-05 0.0031 18.9 0.7 2 23 128 150 128 150 0.97 6 21 1.7e-06 0.00022 22.5 0.5 2 23 158 180 157 180 0.95 7 21 3.6e-07 4.7e-05 24.6 1.0 1 23 186 209 186 209 0.98 8 21 0.0004 0.051 15.1 0.7 1 23 239 262 239 262 0.96 9 21 0.005 0.65 11.6 0.5 1 23 293 316 293 316 0.96 10 21 1.1 1.5e+02 4.2 0.9 2 21 324 343 323 344 0.92 11 21 0.0029 0.38 12.3 1.5 2 23 353 375 353 375 0.96 12 21 0.0013 0.17 13.4 5.9 1 23 397 420 397 420 0.97 13 21 8.8e-05 0.011 17.1 1.6 2 23 427 449 426 449 0.97 14 21 2.5e-05 0.0033 18.8 2.2 2 23 456 478 455 478 0.94 15 21 0.0059 0.76 11.4 2.2 1 23 484 507 484 507 0.97 16 21 0.064 8.2 8.1 4.4 2 23 515 537 515 537 0.95 17 21 0.00041 0.053 15.0 0.3 1 23 544 567 544 567 0.96 18 21 0.012 1.6 10.4 1.2 1 21 574 594 574 597 0.87 19 21 0.00067 0.086 14.4 3.0 3 23 609 630 608 630 0.93 20 21 4.9 6.3e+02 2.2 0.2 2 12 651 661 650 664 0.87 21 21 3.4 4.3e+02 2.7 1.5 1 12 680 691 680 694 0.89
Sequence Information
- Coding Sequence
- ATGATGTCCAGTCAAGATTACGTTTGCGACCATTGCAGTCGCACGTTCACACGAAAATACAATCTACAAACACACATAGAAAACTGTCATTTAAATTCCTCATGTTATTGCGAAATATGCAATCAGAAATTTGGCAGTCCTGCCGGATTACAATTGCACTTGTCAAGAGGTCACAATCGCTTCGGCCAAGGTCTGCCAGAATGCGACCTCTGCGGCAGAATATTTactagaaaacaaaatatcaactCTCACATGATTACTGTTCACTTACAAGGTGGCAGGCAGGATATAAGATGTgctatttgtaataaaacttttacaacAGAACGGAATTTGAAACGGCATACTACTCAGCTACATGCTCCTGGTGTGGAATATCCAACTTGTAACGAATGCCAACGTAGTTTTAGAGGAAAACAGTCTTTGATATCTCATATTCAGACGGcacattcaattaattataagttgaTTAAGTGTCCATTATGTGACAAAGCGTATTCCAATAACAGGAATTTAAAACGCCATGTTGAGCGGCAACATGGGGAAAAGGAAGAGTTCAAGTGTGATATATGTCCGAAAGTCTACACTTCCAATCAGAGTTTAAGAAGACATGCCAGAACACAACATTCTaaagaaattttcaatatgGATATTTATACGTTCTATCAAAACTCTAATTCAAACGAAAATTGTACAGAATCCTACAAGTTTTACTTTTCCTGCGATTTGTGTCAAATGACGTTTGAAAGCGAGCCCAATCTGCGACAGCACACAAAGTTAAATCACTCGTTTCAAGACTTCTACAATTATTGTAGGAAAACTCTTCTAAAAACGTGGAGGGTGTCCCAAAATAGTAATAAGCAGAGACTTTTGTATTACAATTGTGAATTTTGCATCAATGCTTTTTCGACAGTTTACGATTTAAAAGATCACATGCGGTCACTTCATGATAAAGAGTACAGTTTATCCACTTGCAATGTGTGTTTTAATAAGTTCTACAGTAAAGAAACGATgtatgaacataaaaaaatatgtctaccCCCAGAAAATGTGAACAGTTGTAGCCATTGCGATAAACTATTTACAGATGTGTCTAGTTTAGAGTTTCACATAAGAATTTTCCATCCTCAAGCCCAAATCGCTGATTCCAATATATCATCAACTAATATGGATGATATTGATACCTCTTACAGATGCTTACACTGTGACAGAATATATTACAGCGAAAGATCGCTAAAACACCacatgaaattaaaacatacgaCAGATGAAGCTGTAAAATGCCAATATTGCTCCAAAATATGCAGTAATAAGTACTATTTAGCCTCCCATATTAAGATAGTCCATAACAACGATTCTTGGTCCAAATGTGACTATTGTGATAAGCAATTCAAATCTAAGAGAAATATACGTAGGCACATAGAATATACGCACTTGGGCATGCAAAGATATAAGTGTATCGAATGCGAGACACTTTTTAAAGAGAAAAGAAGTCTTCGTAAGCACGTGAGAACTAAACATCCAAATTCCACGTTGTTTCCTCAGTGTCATATATGCGAGAAACGTTTTGAATCGGCAAAATCTTGCAAAATTCACCTAAAATTGCTGCATTCTTTCAACATGAACACCCATCCTTGTGATTTGTGTTCAGTGTCATTCACTTCGTTGGAAGCCTTAAAGATCCATTTAGCTACTAAACATTTGGCAGAAGATGAGATCTATAAATGCAAGGAGTGTAATTTGGTATTTAAAGGTCAAGAGAAATTTGATGTCCATAATGAGCAGTTCCACCTCAATCTACCCACACAGAAAACTTTACCGCGATGcataatatgtacaaaagATTTTAGCACGCGTAAAACATTGAAACGccatattaagaaatttcacGAAGAATTTAACGTAGATGAACTGGCCACCTATGGCTCAAGGAAACGAGTACTTTCTATCGAATGTAACGAGTGCCTAAAGAACTTTAATGACGATTATTATATTGGAGTATACGAAAAGCTGAAAAACATGCGCGActctataattttcaaatgcgAATTCTGCAAAACTTCCTATAATAGCCTAGAGTTTGCTATACAAAGGTACAGACAGACATTCGACGTGTCCAAGTCAAAGTTATATCTGTCTGAACTGTGTACTACTGAAATGAGCGATGATTCTCAGTATAATGATACTATGGAACCGGAAAGTACTAcgtatgatttaaaattagaagCAGATTTCAACATAAAATTAGAGCCATGTTCACCATAA
- Protein Sequence
- MMSSQDYVCDHCSRTFTRKYNLQTHIENCHLNSSCYCEICNQKFGSPAGLQLHLSRGHNRFGQGLPECDLCGRIFTRKQNINSHMITVHLQGGRQDIRCAICNKTFTTERNLKRHTTQLHAPGVEYPTCNECQRSFRGKQSLISHIQTAHSINYKLIKCPLCDKAYSNNRNLKRHVERQHGEKEEFKCDICPKVYTSNQSLRRHARTQHSKEIFNMDIYTFYQNSNSNENCTESYKFYFSCDLCQMTFESEPNLRQHTKLNHSFQDFYNYCRKTLLKTWRVSQNSNKQRLLYYNCEFCINAFSTVYDLKDHMRSLHDKEYSLSTCNVCFNKFYSKETMYEHKKICLPPENVNSCSHCDKLFTDVSSLEFHIRIFHPQAQIADSNISSTNMDDIDTSYRCLHCDRIYYSERSLKHHMKLKHTTDEAVKCQYCSKICSNKYYLASHIKIVHNNDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTLFPQCHICEKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFTSLEALKIHLATKHLAEDEIYKCKECNLVFKGQEKFDVHNEQFHLNLPTQKTLPRCIICTKDFSTRKTLKRHIKKFHEEFNVDELATYGSRKRVLSIECNECLKNFNDDYYIGVYEKLKNMRDSIIFKCEFCKTSYNSLEFAIQRYRQTFDVSKSKLYLSELCTTEMSDDSQYNDTMEPESTTYDLKLEADFNIKLEPCSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00160041;
- 90% Identity
- iTF_00458236;
- 80% Identity
- -