Dvan024073.1
Basic Information
- Insect
- Dione vanillae
- Gene Symbol
- -
- Assembly
- GCA_037178615.1
- Location
- JAZFAU010000332.1:96006-98264[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 6.7e-06 0.00074 20.8 5.6 1 23 6 29 6 29 0.95 2 19 0.0006 0.067 14.7 0.3 2 23 35 57 34 57 0.95 3 19 1.8e-05 0.002 19.5 0.3 2 23 66 88 66 88 0.97 4 19 8.3e-07 9.2e-05 23.7 1.6 2 23 97 119 96 119 0.94 5 19 2.8e-05 0.0031 18.9 0.6 2 23 127 149 127 149 0.96 6 19 1.9e-06 0.00021 22.5 0.5 2 23 157 179 156 179 0.95 7 19 9.6e-07 0.00011 23.5 1.0 1 23 185 208 185 208 0.98 8 19 0.00056 0.062 14.8 0.6 1 23 238 261 238 261 0.96 9 19 0.0029 0.32 12.5 0.8 1 23 292 315 292 315 0.97 10 19 1.4 1.5e+02 4.1 0.7 2 21 323 342 322 343 0.91 11 19 0.021 2.3 9.9 1.6 2 23 352 374 352 374 0.95 12 19 0.12 13 7.5 5.5 1 23 395 418 395 418 0.96 13 19 0.00066 0.073 14.5 1.9 2 23 425 447 424 447 0.97 14 19 2.9e-05 0.0032 18.8 2.2 2 23 454 476 453 476 0.94 15 19 0.0068 0.75 11.4 2.2 1 23 482 505 482 505 0.97 16 19 0.072 8 8.1 4.4 2 23 513 535 513 535 0.95 17 19 0.00083 0.092 14.2 0.5 1 23 542 565 542 565 0.96 18 19 0.022 2.5 9.7 1.1 1 20 572 591 572 595 0.86 19 19 0.016 1.7 10.2 2.7 3 23 607 628 606 628 0.91
Sequence Information
- Coding Sequence
- ATGTCCAGCCAAGATTACGTCTGCGATCACTGCAGTCGCTCGTTCACGAGAAAATATAATCTACAAACCCATATAGAGAACTGTCATTTAAATTCATCATGTTATTGCGATATCTGTGACCAGAGATTCGGCAGTCCAGCCGGCTTACAACTCCATCTGTCGAGAGGTCACAATCGATTCAGCCAAGGTTTACCAGAATGTGATCTCTGCGGCAGAATATTTACAAGGAAACAGAATATAAACTCACACATGATTACTGTGCATTTGCAAGGTGGGAGGCAGGATATAAGGTGTCCGATTTGCAACAAGACTTTCACGACTGAGCGGAATTTGAAGCGGCATAAGAATCAGTTACATGCACCTGGTGTGGAATATCCGACTTGTAACGATTGCCAACGGAGCTTTAGAGGGAAACAGTCTCTCATAGCCCATATACAATCTAtgcatacaaataattttaagctaatCAAGTGCCCTTTGTGTGACAAAGCGTATTCTAATAATAGAAATCTGAAACGCCATGTTGAACGACAACATGGGGAGAAAGAAGAGTTTAAATGCGACATTTGTCCCAAAGTGTATACGTCCAATCAGAGCTTAAGGCGACACGCGAAGACTCAGCACTCTAAAGAAATTTACAACAtggatttatataatttctgcTATAACTCTAGCTCAAATGAGAATTACACTGAGCCGTATAAGTTTTTGTTCTCTTGTGATTTGTGTGAAATGACGTTTGAAAGCGAGCCCAATTTGCGACAGCACACCAAGCAGAATCACTCGTTCCAAGACTTTTACAACTATTGCAGGAAAACTCTGTTGAAAACATGGCGTGTGAACCAAAATAGTGATAAACAAAAGCTGCTGTACTACAATTGTGAATTCTGCATCAATTCCTTCTCAACGGTTTACGATTTGAAAGATCACATGAGATCTCTCCACGACAAAGAGTACAGCTTGTCCACATGTAACGTGTGTTTCAACAAGTTCTACAGCAAAGAAACTATGTatgaacacaaaaatatatgtctgCCACCGGAAAATGTAAACAGTTGCAGTCATTGCGATAAACTCTTCACAGACATCTCCAGTTTAGACTTCCACATACGTATTTTCCATCCCCAGGCCCAAATAGCAGATTCCAATATAACGTCAACTAATTTCGAGGATGTAGACTCATATAGATGTATACACTGTGACAGGATTTACTATAGCGATAGGTCTTTGAAACATCATATGAAGCTCAAACACACTACAGACGAAGCAGTTAAATGTCAGATTTGCTTCAAAAACtgcaataataaatactatttggCGTCTCATATCAAGATCGTCCATAATAATGACGCTTGGTCGAAATGCGACTACTGTGATAAGCAGTTCAAATCCAAGAGGAATATACGAAGGCATATAGAATATACCCATTTGGGTATGCAGAGATATAAGTGTATAGAGTGTGAAACTCTCTTTAAGGAGAAGAGAAGTCTTCGCAAACACGTCAGGACAAAACATCCGAATTCCACGTTGTTCCCACAGTGCCATATATGCGAGAAACGCTTCGAATCGGCGAAATCTTGTAAAATCCATCTAAAATTGCTCCATTCGTTCAATATGAATACCCATCCTTGTGATATGTGTTCGGTTTCGTTCACATCTATCGAAGCTTTAAAGATTCATCTTTCGACGAAACATTTGGCTAAGGACGAGATCTATAAGTGCAAAGAGTGCAACCTGGTTTTTAAAGGTCAGGAGAAGTTCGATCTCCACAACGAAGAGTTCCATCAAAACCTGCCCATACAAAAAACGCTTCCGCGTTGCATTATATGCATGAAAGATTTCAGTACAAGGAAAACTTTGAAGCGTCATATCAAGAAGTTCCACGAGGAGTTCAACGTGGACGAGCTAGCAACTTATGGGTCGAGGAAACGCGTACTCTCAATCGATTGTGGCGAATGCCTGAAGAACTTTAACGACGATTATTACATAGGGCattatgaaaaaatgaaaaatttacgcgattctataatttttaagtgcgaATTCTGCAAAAATTCCTATAATAGCCTAGAATTTGCCATACAGAGGTATAGGCTGACCTTCGACGTGTCTAAGGCTAAGCTGTACTTGTCGGAACTATGTACAGCGGAAATGAGCGATGAATCCCAATACAATGAAACCATGGAGCCGGAAAGTACTACGTTTGATTTGAAAGaagaaattgatttaaatattaaaatcgagcCTTGTTCTCCATGA
- Protein Sequence
- MSSQDYVCDHCSRSFTRKYNLQTHIENCHLNSSCYCDICDQRFGSPAGLQLHLSRGHNRFSQGLPECDLCGRIFTRKQNINSHMITVHLQGGRQDIRCPICNKTFTTERNLKRHKNQLHAPGVEYPTCNDCQRSFRGKQSLIAHIQSMHTNNFKLIKCPLCDKAYSNNRNLKRHVERQHGEKEEFKCDICPKVYTSNQSLRRHAKTQHSKEIYNMDLYNFCYNSSSNENYTEPYKFLFSCDLCEMTFESEPNLRQHTKQNHSFQDFYNYCRKTLLKTWRVNQNSDKQKLLYYNCEFCINSFSTVYDLKDHMRSLHDKEYSLSTCNVCFNKFYSKETMYEHKNICLPPENVNSCSHCDKLFTDISSLDFHIRIFHPQAQIADSNITSTNFEDVDSYRCIHCDRIYYSDRSLKHHMKLKHTTDEAVKCQICFKNCNNKYYLASHIKIVHNNDAWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTLFPQCHICEKRFESAKSCKIHLKLLHSFNMNTHPCDMCSVSFTSIEALKIHLSTKHLAKDEIYKCKECNLVFKGQEKFDLHNEEFHQNLPIQKTLPRCIICMKDFSTRKTLKRHIKKFHEEFNVDELATYGSRKRVLSIDCGECLKNFNDDYYIGHYEKMKNLRDSIIFKCEFCKNSYNSLEFAIQRYRLTFDVSKAKLYLSELCTAEMSDESQYNETMEPESTTFDLKEEIDLNIKIEPCSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00160041;
- 90% Identity
- iTF_00781190; iTF_00775431; iTF_00776169; iTF_00779658; iTF_00781998; iTF_00774642; iTF_00778900; iTF_00782807; iTF_00778168; iTF_00776857; iTF_00780416; iTF_00457391; iTF_00457676;
- 80% Identity
- -