Aobl010460.1
Basic Information
- Insect
- Aphidecta obliterata
- Gene Symbol
- -
- Assembly
- GCA_963966015.1
- Location
- OZ014430.1:12895415-12903233[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.00023 0.84 10.3 0.0 22 46 276 300 269 305 0.90 2 6 0.94 3.5e+03 -1.3 0.0 19 45 302 328 299 335 0.76 3 6 0.0033 12 6.6 0.0 20 44 331 355 314 359 0.88 4 6 0.0064 24 5.7 0.0 21 44 360 383 356 388 0.86 5 6 0.0042 16 6.3 0.3 21 45 388 412 383 420 0.90 6 6 0.021 77 4.0 0.0 20 44 443 467 436 475 0.85
Sequence Information
- Coding Sequence
- ATGGAatatgatttcgaaaaaatatgtcGTGTTTGTTTAGCCGAAAGTGACAAGATGATGTCTCTATTTAAAGTGAATGTTTCTAAGAAAATTATGGCCTGTGCTTCAGTACAGGTCTGGCCAAATGATGAATTGCCAGCACAAATTTGTAACAAATGCTGTGCCAAGTTACATTTTGCTTTTCAGTTCAAAAAACTATGTGAGAAATCTGACTCTAAATTGAGGACTTATGTTGCCAAGAGTGCACAACTGAAGTCTAAGGAAAAACAAATACACTCAGAAGATATGAACCAACATCCAGGTGCAATTAACAACCAAGACATACTGAATAAACAGCTTGAAGAACTGAACAAACATCCAGATATTCATGAGGAGCAATTGCGACATAATACAATAGATACCATGCCGCCACAAAATAACTGTAGATTTGTTGAATGTAATAACGACATTGTTGATGTTTATGTTCAAGACTCGTCCTACATTCAGAATGGCCAACCAATACAGCAAGGGACTTTAGGTCCTATAAATAATTACAATGCACCTCAATCTGCAATTCAAGTCCCAATGCAGATTGGAAGTTATAATATTTCCAATGTTATATATAGTACAACCTATCCGATCACATTACAGCCTTTACAACCACCTTCTCTTATGCAAAATCAGATGCTTACCTCACTACCAGTACAACAAATGCAACAACCGCAACCTCCAGAAAATATTCAGCAGATTACTGGACCAATCACACCAGTAAATAAAGAAATATCTACTGAGAATAATTCGTTGGAGGCACATTcggataaaatgaaaaatgttaaaaaaccCATAGAGAATCCAAACCAATGTCCGGTTTgctttaaaatatttttgaattcaacCAAAAAGAATAGGCAcatgaaaattcattcaaaaacagATATGCCATATAAATGTACAGTTTGTAGCAAAGAATTTATGCATGGTGGTAATTATAAGATTCATATGAGAATGCACAATAATGAGAGACCTTTCAAATGCACAATCTGCCCAAAAGGCTTTGTTCAGTCCCAGGATTTGGAAAAGCATATAAGGACACATACAGGTGAAAGACCCCACAAATGTCCTATGTGTTGGAAAGCATTTTCAGCAGGTTCGAATTTGATAGCACACATAAGAACCCACACCGGAGAACGTCCTTATGTGTGTTCTGTTTGTTCCAAAGCTTTTTGTCAATCAAATGAGTTAACAAAACACATGAGAACACACACAGGAGAAAAATCTCATCGGTGTGATATATGCAATAAAGgtttcaATGGATCCAGTACATTGATAGTCCATAAAAGGTCACATACAGGCGAGAAACCTTTTATGTGTAAAGTTTGCAGTAAGACATTCTCACAATCTGGTTGTCTGACAGCCCATATGAAACGTTATGGAGAATCGAAATACACTTGTGATTTATGCAATGTATCTTTCCATTCAGAAAAAGTGCTGCAGGAACATGAGAAAACAGAGGAACATACAACAAAACTTTTCAAATGTCAGACATGCGGCAAATGTGTTGGTTCATCACAAAGTGAATTTGATAAACATATAATAAGTGAACATATTAATGCTTTGAGTATTACTGGTAGCTAA
- Protein Sequence
- MEYDFEKICRVCLAESDKMMSLFKVNVSKKIMACASVQVWPNDELPAQICNKCCAKLHFAFQFKKLCEKSDSKLRTYVAKSAQLKSKEKQIHSEDMNQHPGAINNQDILNKQLEELNKHPDIHEEQLRHNTIDTMPPQNNCRFVECNNDIVDVYVQDSSYIQNGQPIQQGTLGPINNYNAPQSAIQVPMQIGSYNISNVIYSTTYPITLQPLQPPSLMQNQMLTSLPVQQMQQPQPPENIQQITGPITPVNKEISTENNSLEAHSDKMKNVKKPIENPNQCPVCFKIFLNSTKKNRHMKIHSKTDMPYKCTVCSKEFMHGGNYKIHMRMHNNERPFKCTICPKGFVQSQDLEKHIRTHTGERPHKCPMCWKAFSAGSNLIAHIRTHTGERPYVCSVCSKAFCQSNELTKHMRTHTGEKSHRCDICNKGFNGSSTLIVHKRSHTGEKPFMCKVCSKTFSQSGCLTAHMKRYGESKYTCDLCNVSFHSEKVLQEHEKTEEHTTKLFKCQTCGKCVGSSQSEFDKHIISEHINALSITGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00130763; iTF_00349840; iTF_00349478; iTF_01024319; iTF_01024532; iTF_00965728; iTF_00965406; iTF_00764948;
- 90% Identity
- iTF_00130763;
- 80% Identity
- iTF_00130763;