Csep033570.1
Basic Information
- Insect
- Coccinella septempunctata
- Gene Symbol
- -
- Assembly
- GCA_907165205.1
- Location
- OU015576.1:4558850-4561030[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 5.8e-05 0.84 11.0 0.0 14 46 259 291 255 295 0.87 2 6 0.33 4.8e+03 -1.0 0.0 19 46 293 320 290 326 0.77 3 6 0.033 4.8e+02 2.2 0.0 20 44 322 346 311 350 0.87 4 6 0.0027 39 5.7 0.0 21 44 351 374 347 378 0.86 5 6 0.0027 39 5.7 0.7 21 45 379 403 375 411 0.90 6 6 0.0038 55 5.2 0.1 20 45 434 459 425 463 0.86
Sequence Information
- Coding Sequence
- ATGGAATATGACTTTGAAAAAATTTGTCGTGTTTGCTTGGTTAAAAGTGACGAGATGATGTCTCTTTTCAAAGTTAACGTTTCAAGAAAAATTATGGCTTGTGCTTCAGTACAGGTATGGCCGAATGATGAATTACCCGCACAGATCTGCAACAAATGCTGTGCAAAGTTACATGTAGCTTTCCAGTTCAAAAAACTCTGTGAAAAGTCTGATTCGAAATTGCGGACTTATATTGCTGAGAATGGGCGAATGAAATCAAACAAAAAGCAAATTCAATCAAGTGATTCGCGTCAGCATTCTGTTAATAATCAAGGAATGCTGAATAAGCAGTTGGAAGGATTAAACAAACACCAAGATGTGCATCAGGAGCAATTGCAGCACCATACGCTAGATACTATGCATGCCCAGAACAACTGCAGGTTTGTTGAATGTAGTGATATTGTTGATGTTTATGTTCAAGATTCATCATACGTTCAGAATGGTCAACCCATACAAGGATCTTTAGGTCCTATGAACAACTTCAACACAGCTCAACCCACAATTCAAGCTCCATTGCAAATCGGAAACTACAATGTATCCAATGTTGTTTATAGTAATTCCTATCCAATCACTTTACAGCCACCTCCTTTAATGCATAACCAGATGCTCACCTCAATTCCTATGCAACCAATACAACAAGAAACACCACCAAATATTCAACAAATTCCAGGGCAAGCAGCACCTTCAAAAAAAGAAACAACCACTGAAAATAATTCAATTGAAGCCAATTCAGATAAAATGAAAAATGAAAAAAACTCAGACAATCCTAACCAGTGTCCAGTCTGCTTAAAGATATTTCTGAATTCAACTAAGAAGAACAGGCATATGAAAATACACTCGAAAACAGATATGCCATATAAATGTTCAGTTTGTAGTAAAGAATTTACGCATGGCGGTAATTATAAAATTCATATGAGGATGCATAATAATGAGAGGCCATTCAAATGTACAATGTGTCCAAAAGGATTTGTGCAAGCCCAAGACTTGGAAAAGCATATGAGAACACATACAGGTGAAAGACCACACAAATGTCCTATGTGTTGGAAAGCTTTCTCTGCAGGATCAAATTTAATAGCACATATAAGAACCCACACTGGGGAACGTCCATATGTGTGCTGTGTTTGCTCAAAGGCTTTCTGCCAATCGAATGAATTAACAAAGCACATGAGGACACACACAGGTGAAAAATCTCATAGGTGTGATATATGCAACAAAGGTTTCAATGGGTCCAGCACACTAATTGTCCATAAAAGGTCACACACAGGTGAAAAACCCTTCATGTGCAAAGTTTGCAGCAAGTCATTCTCACAATCAAGTTGTCTCTCAGCACATTTGAAACGTTATGGGGAATCGAAATACCCTTGTGATTTGTGCAACGTGTCTTTCCACTCGGAAAAAGTGTTACAAGAACATGAGAAAACTGAAGAACATAATTCGAAACTTTTCAAGTGCCAATCCTACAGTAAACATGTAGTTTCTGCACAAAGTGGATTTGACAAACATGTTATAAGTGAACATATTGATACTTTGAGTATAACTGGTAGCTAA
- Protein Sequence
- MEYDFEKICRVCLVKSDEMMSLFKVNVSRKIMACASVQVWPNDELPAQICNKCCAKLHVAFQFKKLCEKSDSKLRTYIAENGRMKSNKKQIQSSDSRQHSVNNQGMLNKQLEGLNKHQDVHQEQLQHHTLDTMHAQNNCRFVECSDIVDVYVQDSSYVQNGQPIQGSLGPMNNFNTAQPTIQAPLQIGNYNVSNVVYSNSYPITLQPPPLMHNQMLTSIPMQPIQQETPPNIQQIPGQAAPSKKETTTENNSIEANSDKMKNEKNSDNPNQCPVCLKIFLNSTKKNRHMKIHSKTDMPYKCSVCSKEFTHGGNYKIHMRMHNNERPFKCTMCPKGFVQAQDLEKHMRTHTGERPHKCPMCWKAFSAGSNLIAHIRTHTGERPYVCCVCSKAFCQSNELTKHMRTHTGEKSHRCDICNKGFNGSSTLIVHKRSHTGEKPFMCKVCSKSFSQSSCLSAHLKRYGESKYPCDLCNVSFHSEKVLQEHEKTEEHNSKLFKCQSYSKHVVSAQSGFDKHVISEHIDTLSITGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00130965;
- 90% Identity
- iTF_00349478;
- 80% Identity
- iTF_00349478;