Mdil007454.1
Basic Information
- Insect
- Megalocaria dilatata
- Gene Symbol
- -
- Assembly
- GCA_034642435.1
- Location
- CM067855.1:43543404-43547935[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.00082 17 6.8 0.1 14 46 267 299 262 305 0.87 2 6 0.31 6.4e+03 -1.5 0.0 18 43 300 325 297 329 0.74 3 6 0.0045 93 4.4 0.0 20 44 330 354 318 358 0.87 4 6 0.0016 33 5.9 0.0 21 44 359 382 354 386 0.86 5 6 0.0012 26 6.2 0.3 21 45 387 411 383 419 0.90 6 6 0.00068 14 7.1 0.1 20 45 442 467 433 472 0.87
Sequence Information
- Coding Sequence
- ATGGaatatgattttgaaaaaatttgtagaGTATGTTTAGATGAAAGCGACAAAATGATGTCTCTATTTAAAGTAAATGTTTCAAGGAAAATTATGGCTTGTGCTTCAGTTCAGGTCTGGCCAAATGACGAATTACCTGCTCAAATCTGTAATAAGTGTTGCGCCAAGTTACATGTGGCCTTtcagttcaaaaaattatgtgaGAAGTCCGATTCGAAATTGAGAACTTATATAGCTAAAAGTGGGCAGTTGAAATCTAAGGACAACCAGATTCAACAAAATGATCTAAATCAGCATACAGGTGTTATTAACAATCAAAATGTATTGAATAAACAACTTGAAGAACTAAACAAACAACAAGATATTCATCAGAACCCGTTGCAACAGAACACAGTAGAAACTATGCAGGACTCCAACAACTGTAGATATGTTGAGTGTGGTGGTGACATTGTTGATGTTTACGTTCAGGATCCATCTTACATCCAGaatggtcaatcaattcaacaAGGGACAATAGGATctcttaataattataatacatcTCAGCCTACAATTCAAACTCCATTACAAATTGCAaactataatatttcaaatgttatATACAGTACAACATACCCATTAACATTGCAGCCTTTACAACCAGCACCTTTGATGCATAACCAGATGGTTACTTCATTACCAGTACAACAAATACAGCATTCTCAACCCCTACCAACTATTCAACAAGTTACTGGACAAGTCACTTCAGTTCATAAAGATGTAGCTGTTGAGAACAATTCAAGTGAAGCAAATTCGGATAAAAAAAATGCGAAAAAAACCCAGGAAAACCCAAACCAATGTTCAGTATGTTtaaagatatttttgaattccACTAAGAAGAACAGGCATATGAAAATTCATTCCAAAACAGACATGCCATACAAATGCTCAGTTTGTAATAAAGAGTTTATGCATGGTGGTAATTATAAAATTCATATGAGGATGCACAATAATGAAAGGCCCTTCAAATGTACAATTTGTCCAAAAGGATTCGTCCAAGCACAAGATTTGGAAAAACACATGAGAACACATacagGTGAAAGACCCCACAAATGTCCAATGTGTTGGAAAGCCTTCTCTACAGGTTCAAATCTAATAGCACACATAAGAACTCATACTGGTGAACGTCCATATGTTTGTTCTGTATGTTCAAAAGCATTTTGCCAATCAAATGAATTGACAAAACATATGAGAACTCACACCGGAGAAAAATCTCATAGGTGCGATATATGTAATAAAGgttTCAATGGCTCCAGTACCTTGATAGTCCACAAAAGGTCGCATACTGGTGAAAAACCATTTGTTTGTAAGATTTGCAGCAAGTCATTTTCACAGTCAAGTTGTCTTACAGCACATTTAAAACGTTATGGAGAATCTAAGTATTGCTGTGATTTATGTAATGTAGCTTTTCATTCAGACAAAGTATTGCAAGAACATGAAAAAACTGAAGAACATACAacaaagttttttaaatttgaaacgtGTGATAAACATGTTTCCACACAGAGTGAATTTGACaaacaaataataaatgatCATATTGAATCCTTAAGTATTGCAGGTAGCTAA
- Protein Sequence
- MEYDFEKICRVCLDESDKMMSLFKVNVSRKIMACASVQVWPNDELPAQICNKCCAKLHVAFQFKKLCEKSDSKLRTYIAKSGQLKSKDNQIQQNDLNQHTGVINNQNVLNKQLEELNKQQDIHQNPLQQNTVETMQDSNNCRYVECGGDIVDVYVQDPSYIQNGQSIQQGTIGSLNNYNTSQPTIQTPLQIANYNISNVIYSTTYPLTLQPLQPAPLMHNQMVTSLPVQQIQHSQPLPTIQQVTGQVTSVHKDVAVENNSSEANSDKKNAKKTQENPNQCSVCLKIFLNSTKKNRHMKIHSKTDMPYKCSVCNKEFMHGGNYKIHMRMHNNERPFKCTICPKGFVQAQDLEKHMRTHTGERPHKCPMCWKAFSTGSNLIAHIRTHTGERPYVCSVCSKAFCQSNELTKHMRTHTGEKSHRCDICNKGFNGSSTLIVHKRSHTGEKPFVCKICSKSFSQSSCLTAHLKRYGESKYCCDLCNVAFHSDKVLQEHEKTEEHTTKFFKFETCDKHVSTQSEFDKQIINDHIESLSIAGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00130965;
- 90% Identity
- iTF_00965406;
- 80% Identity
- iTF_00965406;