Basic Information

Insect: Aphidecta obliterata
Gene Symbol: -
Assembly: GCA_963966015.1
Location: OZ014430.1:12895415-12903233[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0094 0.99 10.5 1.5 2 23 280 301 279 301 0.98

2 9 3.2e-05 0.0034 18.3 2.5 1 23 308 330 308 330 0.99

3 9 3.2e-08 3.3e-06 27.7 0.5 1 23 336 358 336 358 0.99

4 9 1.1e-06 0.00011 22.9 0.2 1 23 364 386 364 386 0.98

5 9 1.2e-07 1.3e-05 25.9 2.9 1 23 392 414 392 414 0.99

6 9 1e-05 0.0011 19.8 1.5 1 23 420 442 420 442 0.98

7 9 6.3e-06 0.00066 20.5 2.2 1 22 448 469 448 469 0.95

8 9 0.011 1.1 10.4 0.8 1 23 475 499 475 499 0.92

9 9 0.3 32 5.8 3.7 1 23 504 528 504 528 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0094	0.99	10.5	1.5	2	23	280	301	279	301	0.98
2	9	3.2e-05	0.0034	18.3	2.5	1	23	308	330	308	330	0.99
3	9	3.2e-08	3.3e-06	27.7	0.5	1	23	336	358	336	358	0.99
4	9	1.1e-06	0.00011	22.9	0.2	1	23	364	386	364	386	0.98
5	9	1.2e-07	1.3e-05	25.9	2.9	1	23	392	414	392	414	0.99
6	9	1e-05	0.0011	19.8	1.5	1	23	420	442	420	442	0.98
7	9	6.3e-06	0.00066	20.5	2.2	1	22	448	469	448	469	0.95
8	9	0.011	1.1	10.4	0.8	1	23	475	499	475	499	0.92
9	9	0.3	32	5.8	3.7	1	23	504	528	504	528	0.81

Sequence Information

Coding Sequence: ATGGAatatgatttcgaaaaaatatgtcGTGTTTGTTTAGCCGAAAGTGACAAGATGATGTCTCTATTTAAAGTGAATGTTTCTAAGAAAATTATGGCCTGTGCTTCAGTACAGGTCTGGCCAAATGATGAATTGCCAGCACAAATTTGTAACAAATGCTGTGCCAAGTTACATTTTGCTTTTCAGTTCAAAAAACTATGTGAGAAATCTGACTCTAAATTGAGGACTTATGTTGCCAAGAGTGCACAACTGAAGTCTAAGGAAAAACAAATACACTCAGAAGATATGAACCAACATCCAGGTGCAATTAACAACCAAGACATACTGAATAAACAGCTTGAAGAACTGAACAAACATCCAGATATTCATGAGGAGCAATTGCGACATAATACAATAGATACCATGCCGCCACAAAATAACTGTAGATTTGTTGAATGTAATAACGACATTGTTGATGTTTATGTTCAAGACTCGTCCTACATTCAGAATGGCCAACCAATACAGCAAGGGACTTTAGGTCCTATAAATAATTACAATGCACCTCAATCTGCAATTCAAGTCCCAATGCAGATTGGAAGTTATAATATTTCCAATGTTATATATAGTACAACCTATCCGATCACATTACAGCCTTTACAACCACCTTCTCTTATGCAAAATCAGATGCTTACCTCACTACCAGTACAACAAATGCAACAACCGCAACCTCCAGAAAATATTCAGCAGATTACTGGACCAATCACACCAGTAAATAAAGAAATATCTACTGAGAATAATTCGTTGGAGGCACATTcggataaaatgaaaaatgttaaaaaaccCATAGAGAATCCAAACCAATGTCCGGTTTgctttaaaatatttttgaattcaacCAAAAAGAATAGGCAcatgaaaattcattcaaaaacagATATGCCATATAAATGTACAGTTTGTAGCAAAGAATTTATGCATGGTGGTAATTATAAGATTCATATGAGAATGCACAATAATGAGAGACCTTTCAAATGCACAATCTGCCCAAAAGGCTTTGTTCAGTCCCAGGATTTGGAAAAGCATATAAGGACACATACAGGTGAAAGACCCCACAAATGTCCTATGTGTTGGAAAGCATTTTCAGCAGGTTCGAATTTGATAGCACACATAAGAACCCACACCGGAGAACGTCCTTATGTGTGTTCTGTTTGTTCCAAAGCTTTTTGTCAATCAAATGAGTTAACAAAACACATGAGAACACACACAGGAGAAAAATCTCATCGGTGTGATATATGCAATAAAGgtttcaATGGATCCAGTACATTGATAGTCCATAAAAGGTCACATACAGGCGAGAAACCTTTTATGTGTAAAGTTTGCAGTAAGACATTCTCACAATCTGGTTGTCTGACAGCCCATATGAAACGTTATGGAGAATCGAAATACACTTGTGATTTATGCAATGTATCTTTCCATTCAGAAAAAGTGCTGCAGGAACATGAGAAAACAGAGGAACATACAACAAAACTTTTCAAATGTCAGACATGCGGCAAATGTGTTGGTTCATCACAAAGTGAATTTGATAAACATATAATAAGTGAACATATTAATGCTTTGAGTATTACTGGTAGCTAA
Protein Sequence: MEYDFEKICRVCLAESDKMMSLFKVNVSKKIMACASVQVWPNDELPAQICNKCCAKLHFAFQFKKLCEKSDSKLRTYVAKSAQLKSKEKQIHSEDMNQHPGAINNQDILNKQLEELNKHPDIHEEQLRHNTIDTMPPQNNCRFVECNNDIVDVYVQDSSYIQNGQPIQQGTLGPINNYNAPQSAIQVPMQIGSYNISNVIYSTTYPITLQPLQPPSLMQNQMLTSLPVQQMQQPQPPENIQQITGPITPVNKEISTENNSLEAHSDKMKNVKKPIENPNQCPVCFKIFLNSTKKNRHMKIHSKTDMPYKCTVCSKEFMHGGNYKIHMRMHNNERPFKCTICPKGFVQSQDLEKHIRTHTGERPHKCPMCWKAFSAGSNLIAHIRTHTGERPYVCSVCSKAFCQSNELTKHMRTHTGEKSHRCDICNKGFNGSSTLIVHKRSHTGEKPFMCKVCSKTFSQSGCLTAHMKRYGESKYTCDLCNVSFHSEKVLQEHEKTEEHTTKLFKCQTCGKCVGSSQSEFDKHIISEHINALSITGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00130965;
90% Identity: iTF_00130965;
80% Identity: iTF_00130965;