Basic Information

Insect: Aphidecta obliterata
Gene Symbol: RREB1
Assembly: GCA_963966015.1
Location: OZ014427.1:2683585-2692731[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00083 0.087 13.8 1.3 1 23 84 106 84 106 0.98

2 16 0.00027 0.029 15.3 0.4 1 23 119 141 119 141 0.98

3 16 0.00014 0.015 16.3 5.1 1 23 147 169 147 169 0.97

4 16 6.3 6.6e+02 1.6 0.2 1 8 225 232 225 233 0.90

5 16 0.00045 0.047 14.7 0.3 2 22 255 275 255 277 0.90

6 16 0.4 42 5.4 2.6 1 20 324 343 324 345 0.85

7 16 0.06 6.3 8.0 0.1 1 23 461 483 461 483 0.96

8 16 5.5e-06 0.00057 20.7 0.7 1 23 492 514 492 514 0.99

9 16 0.00069 0.072 14.1 3.1 1 23 520 543 520 543 0.97

10 16 0.00041 0.043 14.8 3.0 1 23 928 951 928 951 0.97

11 16 0.00041 0.043 14.8 0.4 2 23 1165 1186 1164 1186 0.97

12 16 0.1 11 7.2 6.3 1 23 1192 1215 1192 1215 0.97

13 16 0.067 7 7.8 1.9 1 23 1243 1267 1243 1267 0.93

14 16 0.34 36 5.6 1.4 1 23 1323 1346 1323 1346 0.92

15 16 0.014 1.5 10.0 0.4 3 23 1393 1413 1391 1413 0.93

16 16 0.0067 0.71 11.0 5.7 1 23 1419 1441 1419 1441 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00083	0.087	13.8	1.3	1	23	84	106	84	106	0.98
2	16	0.00027	0.029	15.3	0.4	1	23	119	141	119	141	0.98
3	16	0.00014	0.015	16.3	5.1	1	23	147	169	147	169	0.97
4	16	6.3	6.6e+02	1.6	0.2	1	8	225	232	225	233	0.90
5	16	0.00045	0.047	14.7	0.3	2	22	255	275	255	277	0.90
6	16	0.4	42	5.4	2.6	1	20	324	343	324	345	0.85
7	16	0.06	6.3	8.0	0.1	1	23	461	483	461	483	0.96
8	16	5.5e-06	0.00057	20.7	0.7	1	23	492	514	492	514	0.99
9	16	0.00069	0.072	14.1	3.1	1	23	520	543	520	543	0.97
10	16	0.00041	0.043	14.8	3.0	1	23	928	951	928	951	0.97
11	16	0.00041	0.043	14.8	0.4	2	23	1165	1186	1164	1186	0.97
12	16	0.1	11	7.2	6.3	1	23	1192	1215	1192	1215	0.97
13	16	0.067	7	7.8	1.9	1	23	1243	1267	1243	1267	0.93
14	16	0.34	36	5.6	1.4	1	23	1323	1346	1323	1346	0.92
15	16	0.014	1.5	10.0	0.4	3	23	1393	1413	1391	1413	0.93
16	16	0.0067	0.71	11.0	5.7	1	23	1419	1441	1419	1441	0.98

Sequence Information

Coding Sequence: ATGCAGGGCGTTGTGTTTATGCACCAACAAGGTTCACCGCCTCCGAATAATACTTCAGATATGGAAGTATCTCCTAGTCCAATGAACTACTCAACCAAAGAAAAGATAGACCAAAGCCACCACGACTCAGGCGTGTTCTCCGCGACCAGCAACTCGCTCTACGAAGGGTCGGGGAACCGCAGCCAGATGACCCAGTCGGAAAACTGCCCCTCCGAGAGCGGCAGCGAATGCAGCAGCAGCACCGACAGGTTCTCCTGCCCCATCTGCTCCACGATACTGACTTCCCAACACGAGTTCACCCTGCACATCAAGTCTCACAACAGTGACAACGAGACCGTCCAAGACGACAAAGGCTACACCTGCAGGATCTGCTTCAAGGTCCTCAGCTCCAGTTCCAGCCTCGACCGCCACGTCCTGGTGCACAGCGGGGAGCGACCCTTCCACTGCAAATACTGCGGGGATACGTTCACCACCAACGGCAACATGCACAGACACATGAGGGCTCACAACGTGAAGAGCAAGAACTACGAGTCGGATGCTAGCACTGATAGCAGCGGCAGCAATACCGAGTACAACAACAACCGGGTGAAACCGAAACCGAGCAGGAAGCGGAAACTGGAACTGGACGAGGAAGAACTCGTCGGGAACAAGAGGAGCGCCAGCTACGCCGCCTTCAGGTGTCCCGTTTGCGACAGGAACGACTTCCACTCGGTGGAGATCTTGGAGAACCACATGGAAGACAACCATCCGGATTATCCGGCCAAGTGTCAACAGTGCGGCAACGTCTTCTCCAACCAGAAGCAGTTAGAGGTCCATCGGGTGGCAGTGCATGAAAACCACGTGAACCACAAGCATTCAGTCGTCGGTTTCAAGGACCTCACGTTCGTGGATTTCTCCAGCGAGAAGTTCCCGCACATCGCCAGGTACGAGTGCGAGAAGAATCTGCACAAGGGGTCTGGTACTCTAAAGTTCCAATGCAAGAAGTGCAACCGCGCGTTTCCCTGCTCCAGCTCGCTGGAGTTCCACCAGAAGGACTGCAAGGAGAGCAACGGCGGTCTGGACCTCTCCTCCCAGAAACTTAGTGAGGTGGAAGTCAGACGTAACGACTTCTTCTCCCGCTTGAACCTCCAAGATATATCGCCGGAAAAACATATCCCAAACAATGGTGAGAACAACAAGGACCTGGCGGATATACAGACCATAATCTCCATGACCACCAGCGGCAGTCTTCTGCAACAGCTCCAGCACAAAACCAACGAGATGACCAATAACCTCCAGAAATCCCACCAGGAGATGCAACAAGAGTCGGGGAAGAACGAGGAGGAGGAGACCCAAGACGCCTTCGCCGTCGAGTTCaggaagatgaagttgaaaggGGAGTTCCCCTGCAGGTTATGCACAGCCGTTTTCCCAAACTTACGCGCTTTGAAGGGGCATAACAGGGCGCATCTGAACGGGAATAACAACGGGTCTTATCGTTGCAACATGTGCCCCCATTCTTCGGTGGATAAGGCCGCCCTCATCCGTCACATGCGCACCCATAACGGTGATCGGCCTTATGAATGCTCTCTTTGCAACTACGCCTTCACGACGAAGGCGAACTGCGAACGACACTTAAGAAATCGCCACGCCAAAACTACCAGGGAAGAGGTGAAAAAGTCCATCATCTACCACCCCTCGGAAGACCCAACCAACGACGAAATGACCAAACTGTCCAAGGAAGATCCCAGGAAGCTACACAATTCTTCCAGTGAAGTTTTCGACAACGCCTTGGATAAAATCCACTCCTCCACCCCGAAATTCGAGAGCAGACCTCTTCCACCTCCACATCCTCTGACGTCCAACCTTCAATCCCTCAAGGAAAGTCTGATGGGCAAAGAACCCTCACAGTTGTTCCCGAACATCAACGAGGTTATCCGAAGCGAAAACCTGAAATCCCTGAAGGAGTACAGGAGTACCCACAATGGTACCCTTCCAGTTCCTCCTTACCTGCCACCTTACGGCTTCCAACCTAAACCGATTCCTCCGAGTTCAGGAACGATCCAAGTGAAAGATCTGAGCGCCTTGAAGATGAACCCTTACGATAACAATTCGGATGACGAGGAGTATGACGATGACGAAGAGTCCATCGACGTTGTGTTGGATTTGAGCAAGAAGAAGCCTTTGGAGGAGGAACCAAAGCATATTGAAGATATACCTCAAGACTTGTCTGTTAAAACTTCCCCGACACTTCCTCAGGTCGCTCCACCAGTGGCGGAGATCCTCCAGGCGAATCTCTTAAGGACGCCTCCAAAGATTGACCCTGCGGCTTTTTACGCCCAATGGGCTTTGTTGAGGAATGGTTTCGCGGGTTTGCCGAGTTGGCCCAGCTTCCCGTTCAATCCACTGTTTCTCCAACAACTCCAGAACCAAGTGCCACCTGGTGCAGCCTCAGATATGAAGGAAAGGTTGAGGAATCAGCTTTGTGGTGGGACCATCATCGCTGACAATCGTTTGCAGGCTCTGCAACAGATAAGAAACGCAGGCTTGGTGCCAATGACCTTCGAAGGAAGACAAGAGGTGGATAGTACATATCCGGCTCAAAGAACGACAGAGGATATGAGCAGACCTTTAAGTTTGAAGATAGAACAGAACATAAACGAGAATATATCCAGCATGAACAGTCCTTTACCTTCCAGCAAAACGGACATAATGCAATCTCCAAACTCTGTCAAGATGGTTATAAAGAATGGTATTCTGATGCCCAAGCAAAAACAGAGGAGATATCGGACCGAAAGACCTTTCACCTGCGAACATTGCTCAGCCAGATTCACCCTACGTTCAAACATGGAACGTCACATAAAACAACAACATCCCCAGTTTTGGTCCCAACGCCAAAGAGGCAACATTGGAAACCCTGGCAGGAAATCCCAGGTGATGCCGATGAAACCGGGTTTCTGCGATCTGAGCATCCCCAGCTACGAAATACAGAAATCCCAAGGGTACGAGGACAACAAGGATTCCTTCAACGACAGACTGAAATTCGCCATCCTCGCCCAACATCTTCGAGGAGTCAACAACTATACCAACGCCATAAAGCGGGAGGAAGACGAGGAAGACGCCTTGGTCATCGACGAGAACAGCGAGGAGAAACATTCCGATCCGGAAGCGTCTCGCGAGTATTTCAAGGAAGAGGAAGACCAAGAGGAGGAGAAGAATGAGGATGAACAGACGAAGAGTTTCGAAACCAAGAGTGGCAAATCGGAGGAGAACCAAGACTTGGTGCCTGTATCGAGACTGTTGGACAACGCTTCCCAGCAGCAATTCGACGAGTACTTCAAGAGGGACGTCGAGGATCATGGTGCTGGAAGTGAGGAAGACGAGGAGGGGTTGGTAGCCAGTGGTAGTACCAGCGAGGGGAACATTTCTGGAACTGATGAAAATAAATCTGAATCAGAAAACACAGCTCCAGTCAAGAAGAAGTCGGCCTACTCCCTGGCGCCAAACAGGGTGAGCTGCCCCTACTGCAGTCGCAAGTTCCCGTGGACGTCCTCCCTTCGCCGTCACATATTAACCCACACCGGTCAGAAACCCTTCAAATGCAGCCACTGCCCTCTCCTGTTCACCACCAAGTCGAACTGCGACAGGCATCTGCTGAGGAAACACGGGAACGCGGCCTCCACCATCACCAACGACGTAGCGAACAACAACGCCAACTACCTGATGAGGAACGTCCCCGAGAGGCCTTTCAAGTGTTCCAGCTGTCCCAGCAGCACCTTCTCCACCTACACGAACCTGAAGAAGCACATCGGTTCCAAGCACGCCACCAACGCGCAAGGCGACGATATCCGGGCTCAGGGCTACGAGGCTGGTAGCTCGGAAGACGAGAAGATCGTGAGCGTTTCGGATAATATCAACGACTGGGGCAACCAGACGAAAGTGCCGAACCACGAACCTTTACCGAGCGTGGTGAACGCGGACCAACCCTTCAAATGCCACTTGTGCGAGTTTTCCTTCGGCGAACGCCAGGAAGCCTTGGACCACATCAAGGACAAGCACGCCTCCGAATACGACCTGCTGATGTCCAAGAACGCTCTGGACAGCAGCGCGACCACCCCGGAGGAAAGCGCGCACAACGACGAGGAAGACAGCGAGATCAGGGGTAAATTCCCGGATTACTCCAACAGAAAGGTGATCTGCGCGTTCTGCATGCGTCGTTTCTGGTCCGCGGAGGATCTGAGGAGGCACATGAGGACCCACACGGGGGAGAGGCCGTTCATGTGCGACATCTGCAGGAGGAGGTTCACCCTGAAGCACAGCATGTTGCGGCACAGGAAGAAGCACAACGTGAACTTCGACAACGACGGGGCTATCAACAGCGACGACGACGGCGTGTCCCCCAAGTACGACGCGGGTAACAACAACAAGAGGGGTGAGGATTCGGACTTCAACGAGGGTGGAGACCTCATCAGCAATCTGCTGGGGATTCGTCCGTCCTTTATTGATAAGGTGCTCACGGCTTCGGCGGACGACGCCGCCAAGCTTCTGGGTGTCAAAAACGGCCAGAAAGAGTAG
Protein Sequence: MQGVVFMHQQGSPPPNNTSDMEVSPSPMNYSTKEKIDQSHHDSGVFSATSNSLYEGSGNRSQMTQSENCPSESGSECSSSTDRFSCPICSTILTSQHEFTLHIKSHNSDNETVQDDKGYTCRICFKVLSSSSSLDRHVLVHSGERPFHCKYCGDTFTTNGNMHRHMRAHNVKSKNYESDASTDSSGSNTEYNNNRVKPKPSRKRKLELDEEELVGNKRSASYAAFRCPVCDRNDFHSVEILENHMEDNHPDYPAKCQQCGNVFSNQKQLEVHRVAVHENHVNHKHSVVGFKDLTFVDFSSEKFPHIARYECEKNLHKGSGTLKFQCKKCNRAFPCSSSLEFHQKDCKESNGGLDLSSQKLSEVEVRRNDFFSRLNLQDISPEKHIPNNGENNKDLADIQTIISMTTSGSLLQQLQHKTNEMTNNLQKSHQEMQQESGKNEEEETQDAFAVEFRKMKLKGEFPCRLCTAVFPNLRALKGHNRAHLNGNNNGSYRCNMCPHSSVDKAALIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHAKTTREEVKKSIIYHPSEDPTNDEMTKLSKEDPRKLHNSSSEVFDNALDKIHSSTPKFESRPLPPPHPLTSNLQSLKESLMGKEPSQLFPNINEVIRSENLKSLKEYRSTHNGTLPVPPYLPPYGFQPKPIPPSSGTIQVKDLSALKMNPYDNNSDDEEYDDDEESIDVVLDLSKKKPLEEEPKHIEDIPQDLSVKTSPTLPQVAPPVAEILQANLLRTPPKIDPAAFYAQWALLRNGFAGLPSWPSFPFNPLFLQQLQNQVPPGAASDMKERLRNQLCGGTIIADNRLQALQQIRNAGLVPMTFEGRQEVDSTYPAQRTTEDMSRPLSLKIEQNINENISSMNSPLPSSKTDIMQSPNSVKMVIKNGILMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQFWSQRQRGNIGNPGRKSQVMPMKPGFCDLSIPSYEIQKSQGYEDNKDSFNDRLKFAILAQHLRGVNNYTNAIKREEDEEDALVIDENSEEKHSDPEASREYFKEEEDQEEEKNEDEQTKSFETKSGKSEENQDLVPVSRLLDNASQQQFDEYFKRDVEDHGAGSEEDEEGLVASGSTSEGNISGTDENKSESENTAPVKKKSAYSLAPNRVSCPYCSRKFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNAASTITNDVANNNANYLMRNVPERPFKCSSCPSSTFSTYTNLKKHIGSKHATNAQGDDIRAQGYEAGSSEDEKIVSVSDNINDWGNQTKVPNHEPLPSVVNADQPFKCHLCEFSFGERQEALDHIKDKHASEYDLLMSKNALDSSATTPEESAHNDEEDSEIRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFMCDICRRRFTLKHSMLRHRKKHNVNFDNDGAINSDDDGVSPKYDAGNNNKRGEDSDFNEGGDLISNLLGIRPSFIDKVLTASADDAAKLLGVKNGQKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00349474; iTF_00764965; iTF_00020747; iTF_00999054; iTF_00965431; iTF_01024348;
90% Identity: -
80% Identity: -