Afon005430.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Anopheles fontenillei
Gene Symbol
-
Assembly
GCA_008817895.1
Location
VTWG01005322.1:12846-25943[-]

Transcription Factor Domain

TF Family
zf-GAGA
Domain
zf-GAGA domain
PFAM
PF09237
TF Group
Zinc-Coordinating Group
Description
Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 1.6 6e+03 -2.8 0.0 13 30 65 82 57 84 0.82
2 13 0.00083 3 7.7 0.1 21 43 101 123 94 132 0.86
3 13 0.0016 5.8 6.8 0.2 23 47 131 155 127 161 0.83
4 13 0.005 18 5.2 0.1 23 47 159 183 156 188 0.85
5 13 0.0049 18 5.3 0.1 23 48 187 212 184 217 0.85
6 13 0.0035 13 5.7 0.0 23 49 215 241 212 246 0.85
7 13 0.36 1.3e+03 -0.7 0.0 23 48 243 268 240 273 0.80
8 13 0.012 43 4.0 0.0 23 49 271 297 268 302 0.85
9 13 0.35 1.3e+03 -0.7 0.0 23 48 299 324 296 330 0.82
10 13 0.38 1.4e+03 -0.8 0.0 23 48 327 352 319 357 0.82
11 13 0.016 59 3.6 0.0 23 48 355 380 351 384 0.84
12 13 0.016 60 3.6 0.0 21 45 381 404 379 410 0.87
13 13 7.1e-05 0.26 11.2 0.1 23 44 411 432 408 438 0.91

Sequence Information

Coding Sequence
ATGTTCTACCCGCTGcAAACCCAATTCGATGATGGTGTGATAGAGCTAACACGGTCGGAAATGCTCCAGCAGGATCATCTGGTTGACAATAAGCATTTTGTCGTGTCGCTATCCCTGGGCAATACGCTTATCAATCTCAACAAAATCAAGTGTCCACAGTGCCGGAAGCGTTTCGATACGATGGAGGAAATGGAACAGCACCGGACGAAGCATTTGACGGAGAACAAGTTTAAGTGCGAAATATGCAGCAAAGAATTTCCCAGCCATAGTTCCATGTGGAAGCACACCAAGGCACACACGGGCGAACGTCCTTTCGTTTGTCAGATTTGTAACAAAGGCTTCACCCAACTGGCCAACCTGCAACGACATGATCTCGTCCACAATGGACTAAAGCCGTTCAAGTGTCCCATCTGTGAAAAATGCTTTACCCAGCAAGCCAACATGTTGAAACATCAACTTCTGCATACCGGTCTTAAGCCGTACAAATGTCCGGTGTGCGAGAAAGCGTTCTCGCAACATGCAAACATGGTCAAACATCAAATGCTTCATACAGGATTAAAGCCGTACAAGTGTCCCGTTTGCGAAAAGGCATTTACGCAACACGCCAACATGATTAAACATCAAATGTTACATACTGgtcTCAAGCCATACAAATGTCCTGTTTGTGATAAAGCCTTTACGCAGCAGGCCAACATGGTGAAACATCAAATGTTGCACACCGGCCTTAAACCGTACAAATGTTCCACCTGTGGCAAGGCGTTCGCCCAGCAGGCCAACATGGTCAAACACGAGATGCTTCATACCGgtaTTAAACCGTACAAGTGTCCCACCTGTGACAAAGCATTTGCCCAGCAGGCGAACATGATGAAGCATCAAATGTTGCACACGGGATTGAAGCCGTACAAGTGCGGCACGTGCGACAAAGCGTTTGCCCAGCAGGCCAATATGGTCAAGCATCAGATGCTGCATACCGGTTTAAAACCGTACAAATGCAATACCTGTGGCAAGGCATTCGCCCAGCAGGCCAACATGGTCAAACACGAGATGCTTCATACCGGAATCAAACCATACAAATGTCCTACCTGCGACAAAGCATTTGCCCAGCAGGCGAACATGGTGAAGCATCAGATGCTCCATACGGGAGAGAAACCATTCAAATGCAAAAGCTGTGATAAGGCTTTCTCACAAAACGCCAATCTGAAAAAGCACGAAATGGTACATCTCGGCATACGGCCCCACACCTGCCCGCTGTGCACGAAGTCCTACTCGCAGTATTCGAACCTGAAGAAGCATTTGCTAAGCCACCAGAAGCAGGCTATCAAGCAGGAGCAACAGAACGGTCAGGTGATGGCTATCCTCTACAGCTGCCAGACGTGCAAGATGCAGTTTGAGGATATCATCGAGTTCGAGCGCCACACCAGACGGTGCGGCATCAGcaccgtgcagcagcacagcgTGAAGCTGGAAAACATCAAGAGCGAGATCCTGTCGCCGCTGTTCCACATTCCGCCgttcaacaacaaccacagcacATAA
Protein Sequence
MFYPLQTQFDDGVIELTRSEMLQQDHLVDNKHFVVSLSLGNTLINLNKIKCPQCRKRFDTMEEMEQHRTKHLTENKFKCEICSKEFPSHSSMWKHTKAHTGERPFVCQICNKGFTQLANLQRHDLVHNGLKPFKCPICEKCFTQQANMLKHQLLHTGLKPYKCPVCEKAFSQHANMVKHQMLHTGLKPYKCPVCEKAFTQHANMIKHQMLHTGLKPYKCPVCDKAFTQQANMVKHQMLHTGLKPYKCSTCGKAFAQQANMVKHEMLHTGIKPYKCPTCDKAFAQQANMMKHQMLHTGLKPYKCGTCDKAFAQQANMVKHQMLHTGLKPYKCNTCGKAFAQQANMVKHEMLHTGIKPYKCPTCDKAFAQQANMVKHQMLHTGEKPFKCKSCDKAFSQNANLKKHEMVHLGIRPHTCPLCTKSYSQYSNLKKHLLSHQKQAIKQEQQNGQVMAILYSCQTCKMQFEDIIEFERHTRRCGISTVQQHSVKLENIKSEILSPLFHIPPFNNNHST